Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0510
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_50761| Best HMM Match : RCSD (HMM E-Value=4.4)                      28   5.6  
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 17/64 (26%), Positives = 36/64 (56%)
 Frame = +2

Query: 341 SSVSEAWIADHARHVTRMLPGGMFVQGIFVTSDEDVFEDPNCFSKLRSTLNHIYKG*VSM 520
           SS S++W+ D++  V  ++P G+ V G++++S + +  D    +K+ + L+       S 
Sbjct: 55  SSSSDSWLVDYS-DVASLIPEGIHVCGVYISSPKHLKLDHPSSTKVLNDLSAKISDEASP 113

Query: 521 SICL 532
            IC+
Sbjct: 114 MICV 117


>SB_50761| Best HMM Match : RCSD (HMM E-Value=4.4)
          Length = 482

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 144 YSPEHCLQYLEQYASKEIFAIGLILGQM--TDARENVIHWLAHQKKKDQRLV*NQIMA 311
           Y  +  LQ++ +Y   E + + L LG +  TD+ + +  WL +   K++ LV + I A
Sbjct: 232 YQDDRQLQHIVEYPDNEGYMLEL-LGSILQTDSVQAIQSWLVNAPNKEKELVLDMIRA 288


>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1798

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 116  YKLNNAQNSVFTRALPSIFGTICLQRNICYRANPRSDDRC*RECNPLARTPEEKGSEIGI 295
            +K +N +  V    L S+  ++C+ RN+ YR     +D   RE +P A  P E+  +  +
Sbjct: 1362 HKRHNIRIWVVYITLYSVENSVCVLRNLSYRL----EDEIDRELHPDAPLPNEEKKKDKV 1417

Query: 296  ESNY 307
             S +
Sbjct: 1418 ASEH 1421


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,126,934
Number of Sequences: 59808
Number of extensions: 387047
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)