Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0510
         (643 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2143|AAF49917.2|  492|Drosophila melanogaster CG10616-P...    36   0.062

>AE014296-2143|AAF49917.2|  492|Drosophila melanogaster CG10616-PA
           protein.
          Length = 492

 Score = 35.5 bits (78), Expect = 0.062
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +3

Query: 135 RTVYSPEHCLQYLEQYASKEIFAIGLILGQMTDARENVIHWLAHQKKKDQRL 290
           RTV   +H   YLE+ A +  F+ G+I+G   D  ++V+  LA   ++D  L
Sbjct: 2   RTVLLSKHDELYLEKCAQENQFSYGIIVGHQADLTKSVVVHLARNNEEDADL 53



 Score = 28.7 bits (61), Expect = 7.1
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 314 DKPEIAKNLSSVSEAWIADHARHVTRMLPGGMFVQGIFVTS-DEDVFEDPNC-FSKLRST 487
           D  E+   +S ++   +A      ++M PG   V GIFV+S   DV  + +  F   +  
Sbjct: 55  DLSEVRLTISDINSQALASQWLSASKMCPGSFDVIGIFVSSVRSDVVNEQSAEFKNAKKL 114

Query: 488 LNHIY 502
            + IY
Sbjct: 115 FSDIY 119


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,439,046
Number of Sequences: 53049
Number of extensions: 549408
Number of successful extensions: 1036
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)