Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0510
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28670.1 68416.m03578 expressed protein                             43   2e-04
At4g36210.2 68417.m05152 expressed protein contains Pfam PF05277...    29   2.0  
At4g36210.1 68417.m05151 expressed protein contains Pfam PF05277...    29   2.0  
At4g12020.1 68417.m01912 protein kinase family protein similar t...    29   2.6  
At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative ...    29   3.5  
At2g44880.1 68415.m05587 pentatricopeptide (PPR) repeat-containi...    28   6.1  
At2g18960.1 68415.m02213 ATPase 1, plasma membrane-type, putativ...    28   6.1  

>At3g28670.1 68416.m03578 expressed protein
          Length = 491

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/38 (47%), Positives = 27/38 (71%)
 Frame = +2

Query: 344 SVSEAWIADHARHVTRMLPGGMFVQGIFVTSDEDVFED 457
           S+   W+A+HAR V+RML GGM V GI+V + +  F++
Sbjct: 86  SIDSDWVAEHARQVSRMLLGGMKVVGIYVWASDIAFKN 123


>At4g36210.2 68417.m05152 expressed protein contains Pfam PF05277:
           Protein of unknown function (DUF726)
          Length = 516

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 257 ARTPEEKGSEIGIESNYGLDKPEIAKNLSSVSEAWIADHARHV 385
           A +   +G E G+    G  KPE+ +N  SV E  +  H R +
Sbjct: 65  AESAAREGLEAGVVIIDGSHKPEVLENEKSVEEVTLLSHQRKI 107


>At4g36210.1 68417.m05151 expressed protein contains Pfam PF05277:
           Protein of unknown function (DUF726)
          Length = 672

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 257 ARTPEEKGSEIGIESNYGLDKPEIAKNLSSVSEAWIADHARHV 385
           A +   +G E G+    G  KPE+ +N  SV E  +  H R +
Sbjct: 187 AESAAREGLEAGVVIIDGSHKPEVLENEKSVEEVTLLSHQRKI 229


>At4g12020.1 68417.m01912 protein kinase family protein similar to
            mitogen-activated protein kinase [Arabidopsis thaliana]
            GI:1255448; contains Pfam profiles PF02671: Paired
            amphipathic helix repeat, PF03106: WRKY DNA-binding
            domain, PF00560: Leucine Rich Repeat, PF00069: Protein
            kinase domain, PF00931: NB-ARC domain
          Length = 1798

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 317  KPEIAKNLSSVSEAWIADHARHVTRMLPGGMFVQGIFVTSDEDVFE-DPNCFSKL 478
            + E A      S  W AD+ RHV     G   ++GIF+      F+ +PN F K+
Sbjct: 1121 RQESADRPGDRSRLWNADYIRHVFINDTGTSAIEGIFLDMLNLKFDANPNVFEKM 1175


>At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative /
           proton pump, putative similar to P-type
           H(+)-transporting ATPase from [Phaseolus vulgaris]
           GI:758250, [Lycopersicon esculentum] GI:1621440,
           SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
           tuberosum] GI:435001; contains InterPro accession
           IPR001757: ATPase, E1-E2 type
          Length = 949

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 174 EQYASKEIFAIGLILGQMTDARENVIHWLAH 266
           + +  KEIFA G++LG        V  WLAH
Sbjct: 704 DSWKLKEIFATGVVLGTYMALVTVVFFWLAH 734


>At2g44880.1 68415.m05587 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 555

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 477 NLLKQLGSSKTSSSLVTNMP--*TNIPPGSILVTCRAWSAIHASDTLLK 337
           +LL + GS K +  L+TNMP     I   S L  C  +  I  ++ +LK
Sbjct: 417 DLLGRAGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILK 465


>At2g18960.1 68415.m02213 ATPase 1, plasma membrane-type, putative /
           proton pump 1, putative / proton-exporting ATPase,
           putative strong similarity to SP|P20649 ATPase 1, plasma
           membrane-type (EC 3.6.3.6) (Proton pump 1) {Arabidopsis
           thaliana}; contains InterPro accession IPR001757:
           ATPase, E1-E2 type; contains Pfam profile PF00690:
           Cation transporter/ATPase, N-terminus
          Length = 949

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 174 EQYASKEIFAIGLILGQMTDARENVIHWLAHQ 269
           + +  KEIFA G++LG        +  W AH+
Sbjct: 702 DSWKLKEIFATGIVLGGYQAIMSVIFFWAAHK 733


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,534,846
Number of Sequences: 28952
Number of extensions: 273756
Number of successful extensions: 547
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)