Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0509
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0335 - 24164714-24165574                                         29   2.7  
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409...    28   4.7  
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510...    27   6.3  

>05_05_0335 - 24164714-24165574
          Length = 286

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 113 RYICPPPLTSATIDYRTNNDVQVNRGKANFSW 208
           R+  PPP T+A+    +  + QV RG  +F W
Sbjct: 216 RHSLPPPATTASGGGASGGERQVRRGSRSFLW 247


>03_06_0642 +
           35239658-35240083,35240167-35240238,35240305-35240919,
           35241253-35241435,35241604-35241663,35241733-35241936,
           35242497-35242745,35243609-35243707,35243760-35243858,
           35244463-35244480,35244668-35244862,35244981-35245073,
           35245265-35245531,35245884-35246102
          Length = 932

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 140 SATIDYRTNNDVQVNRGKANFSWIL 214
           S+ + Y++NN    NRG  NFS +L
Sbjct: 188 SSILSYQSNNSTSQNRGLKNFSLLL 212


>07_03_1757 +
           29250163-29250349,29250612-29250813,29250898-29251008,
           29251112-29251160,29251247-29251353,29251439-29251942,
           29252486-29252614,29252865-29253161,29253274-29253720,
           29253828-29253893,29254109-29254169,29254314-29254463,
           29254555-29254689,29254791-29254818,29255430-29255479
          Length = 840

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 184 PRES*FFLDSAINPLKISIHGKDRILYYCKVAWHAIEQLAKPRSFEITKSNFR*EPESD 360
           P++    LD   NP  +    +DRI++  + A   + +L KP   EI  S  R +P S+
Sbjct: 70  PKQIQEILDVPPNPSYLISPRRDRIMFLQRTAMPPLSELTKP---EIVLSGIRIDPGSN 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,873,061
Number of Sequences: 37544
Number of extensions: 248376
Number of successful extensions: 500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)