Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0509
         (496 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)                 33   0.17 
SB_59552| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)                     27   6.4  
SB_27784| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)                 27   8.5  

>SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)
          Length = 936

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 208 PRKISFPSVYLNIVVRAVVNGGRSEWRR 125
           P  ++ P  Y+ + ++AVVNG R +WRR
Sbjct: 438 PPPLATPLKYMLLSIKAVVNGSREDWRR 465


>SB_59552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -1

Query: 178 LNIVVRAVVNGGRSEWRRTNIPLLKQKISIFFWHYRRIVDEHCKR 44
           L ++   V++  + +W R ++PL+   I +   H + +V EHCKR
Sbjct: 83  LMLLTELVLDQAQEDWGR-HLPLMLHVIFLGLDHGKAMVYEHCKR 126


>SB_19938| Best HMM Match : TolA (HMM E-Value=0.22)
          Length = 2279

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 220  NPLKISIHGKDRILYYCKVAWHAIEQLAKPRSFEITKSNFR*EPESDH 363
            N  ++S+ GK+ ILY  K      + +  P+ + +T+S+     E  H
Sbjct: 1559 NDQELSVIGKESILYKLKTEAIVEQDVVSPKQYPVTESSDARRDEIGH 1606


>SB_27784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
 Frame = -1

Query: 262 IKFYPSHG*RFSKDLLQNPRKISF-------PSVYLNIVVRAVVNGGRSEWRRTNIPLLK 104
           +KF+P+ G R + DL   P   S+           +        NG   EWRR     + 
Sbjct: 3   VKFHPASGNRSTLDLRDTPEDTSYWVEERKIDDKEITFYKNYATNGYLGEWRRLIAKTVN 62

Query: 103 QKISIF 86
           Q+++ F
Sbjct: 63  QELATF 68


>SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
          Length = 1597

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 232 ISIHGKDRILYYCKVAWHAIEQLAK--PRSFEITKSNFR*EPE 354
           I + GK+   +YCK   H + +  K   +S E TK N    P+
Sbjct: 375 IVVQGKEATCHYCKKKGHIVAKCLKKAKKSSETTKPNSNHHPK 417


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,036,635
Number of Sequences: 59808
Number of extensions: 292137
Number of successful extensions: 527
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)