Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0509
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical...    28   4.3  
Z81537-10|CAB04382.1|  416|Caenorhabditis elegans Hypothetical p...    27   7.5  
AF016416-1|AAB65275.1|   73|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical
           protein Y66D12A.21 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -1

Query: 226 KDLL-QNPRKISFPSVYLNIVVRAVVNGGRSEWRRTNIPLLKQKISIFFWHYRR 68
           KD L +N +K++   +Y+    R  +  G+ E+   ++P   +KISIF + +RR
Sbjct: 230 KDFLNENCKKLNKNDLYVENSRRLYIFSGKFEF---SVPKSSRKISIFLFFFRR 280


>Z81537-10|CAB04382.1|  416|Caenorhabditis elegans Hypothetical
           protein F41D3.11 protein.
          Length = 416

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +1

Query: 46  VCNARQRCDDNAKKILKFSVLIKVYLSAATHFG 144
           +C        N   +  F   IK Y   ATHFG
Sbjct: 243 LCRKVFNASQNFADLFSFEACIKTYFGVATHFG 275


>AF016416-1|AAB65275.1|   73|Caenorhabditis elegans Hypothetical
           protein F29A7.5 protein.
          Length = 73

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 205 RKISFPSVYLNIVVRAVVNGGRSEWRRTNIPLLKQKISIFFWHYR 71
           RK++  ++   +  R +++  R       +P   +K+S FFW YR
Sbjct: 7   RKLTSANLLDPVRCRLLISRNRCRVTGVKVPNPLKKVSNFFWRYR 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,485,355
Number of Sequences: 27780
Number of extensions: 234359
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)