Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0509
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   1.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.5  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   9.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.5  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 294 FDCVPRNFTII*NSILPMDRDFQRIYCRIQEKLAFP 187
           F+ + +N     NS+LP   + Q +  R  E + FP
Sbjct: 330 FNLIDQNAVGCWNSLLPYSPENQAVVARHDEAMIFP 365


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 161 CGSQWWPK*VAADKYTFI 108
           CGS W    +A D+Y  I
Sbjct: 137 CGSIWTMTMIAFDRYNVI 154


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 161 CGSQWWPK*VAADKYTFI 108
           CGS W    +A D+Y  I
Sbjct: 103 CGSIWTMTMIAFDRYNVI 120


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 161 CGSQWWPK*VAADKYTFI 108
           CGS W    +A D+Y  I
Sbjct: 13  CGSIWTMTMIAFDRYNVI 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,000
Number of Sequences: 438
Number of extensions: 3002
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)