Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0509
         (496 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58530.1 68416.m06524 F-box family protein-related contains w...    31   0.56 
At5g61910.3 68418.m07772 expressed protein                             28   4.0  
At5g61910.2 68418.m07771 expressed protein                             28   4.0  
At5g61910.1 68418.m07770 expressed protein                             28   4.0  
At5g54440.1 68418.m06780 expressed protein                             27   5.3  
At3g48195.1 68416.m05258 phox (PX) domain-containing protein con...    27   5.3  
At5g37630.1 68418.m04532 chromosome condensation family protein ...    27   9.2  

>At3g58530.1 68416.m06524 F-box family protein-related contains weak
           similarity to F-box protein FBL2 (GI:6010699) [Rattus
           norvegicus]
          Length = 353

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 199 ISFPSVYLNIVVRAVVNGGRSEWRRTNIPLLKQKISIFFWHYRRIVDEHCK 47
           IS+PS++L I +R + N G       ++P  +Q   I     + +VD H K
Sbjct: 50  ISYPSIWLTINLREMTNAGDRLLAALSLPRYRQVKHINLEFAQGVVDSHLK 100


>At5g61910.3 68418.m07772 expressed protein
          Length = 742

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 379 AMGYDHGPIRVPNGNYSS*SQ-RNVV*LTVRLRATQLYNNIKFYPSHG 239
           A+GY H P  V  GNYS+ SQ  NV   T     T  Y+  ++Y + G
Sbjct: 458 AIGYTHQPQSVA-GNYSTHSQPGNVEESTQSYAGTDSYSQQQYYAAMG 504


>At5g61910.2 68418.m07771 expressed protein
          Length = 738

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 379 AMGYDHGPIRVPNGNYSS*SQ-RNVV*LTVRLRATQLYNNIKFYPSHG 239
           A+GY H P  V  GNYS+ SQ  NV   T     T  Y+  ++Y + G
Sbjct: 454 AIGYTHQPQSVA-GNYSTHSQPGNVEESTQSYAGTDSYSQQQYYAAMG 500


>At5g61910.1 68418.m07770 expressed protein
          Length = 738

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 379 AMGYDHGPIRVPNGNYSS*SQ-RNVV*LTVRLRATQLYNNIKFYPSHG 239
           A+GY H P  V  GNYS+ SQ  NV   T     T  Y+  ++Y + G
Sbjct: 454 AIGYTHQPQSVA-GNYSTHSQPGNVEESTQSYAGTDSYSQQQYYAAMG 500


>At5g54440.1 68418.m06780 expressed protein
          Length = 829

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 223 DLLQNPRKIS-FPSVYLNIVVRAVVNGGRSEWRRTNIPLLKQKISIFFWH 77
           DLL+    I  F + YLN+   A  N  RS W+R  + L  +  ++ F H
Sbjct: 123 DLLKTLSSIQDFENKYLNLTKGAAENYHRSWWKRHGVVLDGEIAAVCFKH 172


>At3g48195.1 68416.m05258 phox (PX) domain-containing protein
           contains Pfam profile PF00787: PX domain
          Length = 938

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 43  IVCNARQRCDDNAKKILKF 99
           + CNARQ CDD +  I  F
Sbjct: 835 VPCNARQACDDTSSLIFPF 853


>At5g37630.1 68418.m04532 chromosome condensation family protein
           contains pfam profile: PF04154 chromosome condensation
           protein 3, C-terminal region
          Length = 1051

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 19/77 (24%), Positives = 37/77 (48%)
 Frame = -1

Query: 283 ATQLYNNIKFYPSHG*RFSKDLLQNPRKISFPSVYLNIVVRAVVNGGRSEWRRTNIPLLK 104
           +T+   N     + G  F+K LL   +  + P+ +   V+  ++    SE  +  +   K
Sbjct: 694 STESSENESVKATVGEGFAKLLLLGEKYPNLPASFYPFVLGKLIALYFSEESKEQLRF-K 752

Query: 103 QKISIFFWHYRRIVDEH 53
           Q +S+FF HY  + ++H
Sbjct: 753 QCLSVFFEHYASLSEKH 769


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,624,438
Number of Sequences: 28952
Number of extensions: 210249
Number of successful extensions: 406
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)