BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0506 (575 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 60 2e-10 SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 29 0.64 SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 29 0.64 SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 4.5 >SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosaccharomyces pombe|chr 1|||Manual Length = 815 Score = 60.1 bits (139), Expect = 2e-10 Identities = 29/53 (54%), Positives = 37/53 (69%) Frame = -2 Query: 469 MDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRF 311 MDE+ V ++ R H EEAMK ARRSVSD ++R+YE +A L SRG T F+F Sbjct: 742 MDEDASVSQVQRHHVEEAMKMARRSVSDAEVRRYEAYAHQLLTSRGL-TGFQF 793 >SPBC947.01 |||AAA family ATPase, unknown biological role|Schizosaccharomyces pombe|chr 2|||Manual Length = 660 Score = 28.7 bits (61), Expect = 0.64 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -2 Query: 451 VPEISRAHFEEAMKFARRSVSDNDIRKYE 365 +P IS HF+ +++ R SVS I +YE Sbjct: 622 IPPISLNHFKASLRTIRPSVSQEGIHRYE 650 >SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pombe|chr 2|||Manual Length = 779 Score = 28.7 bits (61), Expect = 0.64 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -2 Query: 457 DPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQ 353 +P+ ++ A FE A K + SVSD D +KY+ A+ Sbjct: 735 EPI-RVTNADFELAFKNIKPSVSDRDRQKYQRLAK 768 >SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 855 Score = 25.8 bits (54), Expect = 4.5 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%) Frame = -2 Query: 193 GASPPSR*TRTNVLSVCPACRP-TTPTWRLAPAG 95 G + R TN C C+ TTP WR +P G Sbjct: 619 GDANTRRANATNPTPTCTNCQTRTTPLWRRSPDG 652 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,247,097 Number of Sequences: 5004 Number of extensions: 43476 Number of successful extensions: 111 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 111 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 246098644 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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