Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0506
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    60   2e-10
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    29   0.64 
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    29   0.64 
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   4.5  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 29/53 (54%), Positives = 37/53 (69%)
 Frame = -2

Query: 469 MDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRF 311
           MDE+  V ++ R H EEAMK ARRSVSD ++R+YE +A  L  SRG  T F+F
Sbjct: 742 MDEDASVSQVQRHHVEEAMKMARRSVSDAEVRRYEAYAHQLLTSRGL-TGFQF 793


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 451 VPEISRAHFEEAMKFARRSVSDNDIRKYE 365
           +P IS  HF+ +++  R SVS   I +YE
Sbjct: 622 IPPISLNHFKASLRTIRPSVSQEGIHRYE 650


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 457 DPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQ 353
           +P+  ++ A FE A K  + SVSD D +KY+  A+
Sbjct: 735 EPI-RVTNADFELAFKNIKPSVSDRDRQKYQRLAK 768


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -2

Query: 193 GASPPSR*TRTNVLSVCPACRP-TTPTWRLAPAG 95
           G +   R   TN    C  C+  TTP WR +P G
Sbjct: 619 GDANTRRANATNPTPTCTNCQTRTTPLWRRSPDG 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,097
Number of Sequences: 5004
Number of extensions: 43476
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)