Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0506
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 89 2e-18
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 88 5e-18
08_02_0657 - 19749835-19751942,19753123-19753561 37 0.013
08_02_1076 - 24151334-24152241,24152334-24152610 33 0.16
02_03_0391 - 18471625-18472125 30 1.5
02_02_0486 - 10856842-10858104 29 2.0
08_01_0601 - 5268520-5271112,5272448-5272950 29 2.7
07_03_1170 - 24505743-24505875,24506087-24506475,24507133-245073... 29 2.7
08_02_1195 - 25149891-25151402,25152194-25152493 29 3.5
03_05_0617 + 26163161-26163595,26163678-26164202 29 3.5
02_01_0716 + 5348720-5349115 28 4.6
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 4.6
07_03_0743 - 21118619-21119071 28 6.1
06_02_0211 - 13043968-13044646,13044752-13045037,13045903-130459... 28 6.1
04_04_0545 + 26141335-26141793,26141883-26141981 28 6.1
01_06_1540 - 38111557-38111985,38112087-38112311,38112494-381128... 28 6.1
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393 27 8.1
04_03_0980 + 21406822-21409496,21410322-21410376 27 8.1
01_06_0604 + 30536172-30537143 27 8.1
01_06_0280 + 28129750-28129868,28130677-28131145,28133605-281338... 27 8.1
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 89.4 bits (212), Expect = 2e-18
Identities = 41/55 (74%), Positives = 46/55 (83%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRF 311
M+ DE D + EI AHFEE+MK+ARRSVSD DIRKY+ FAQTLQQSRGFGT FRF
Sbjct: 726 MEEDEVDDIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRF 780
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 87.8 bits (208), Expect = 5e-18
Identities = 40/55 (72%), Positives = 46/55 (83%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRF 311
M+ DE D + EI AHFEE+MK+ARRSVSD DIRKY+ FAQTLQQSRGFG+ FRF
Sbjct: 735 MEEDEVDDIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 789
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = -2
Query: 445 EISRAHFEEAMKFARRSVSDNDIRKYEMF 359
E++ HF+ AMK AR+SVS+ D+ KYE F
Sbjct: 731 ELTVDHFKSAMKHARKSVSELDVIKYEYF 759
>08_02_1076 - 24151334-24152241,24152334-24152610
Length = 394
Score = 33.1 bits (72), Expect = 0.16
Identities = 32/116 (27%), Positives = 47/116 (40%)
Frame = +2
Query: 122 CGGATRRTNRQDVSSGLSRWWRCPEVASETQFSCTGRRHPPPPGSGLVAR*STRAPCSSR 301
C G R + + + S L CP + + C G + PPP + A +R
Sbjct: 180 CRGEERSSEAEQLFSWLDT---CP--SRSVVYVCFGSMYKPPPAQAAALGAALEAS-GAR 233
Query: 302 VCWESEVGSEAAALLQGLREHLVLADVVVGHGAARELHRLLEVSAANLRNGVFLVH 469
WE VG++AA + +GL E VV G A ++ L + G FL H
Sbjct: 234 FVWE--VGADAAVVPEGLEERTAARGRVV-RGWAPQMEILRHAAV-----GAFLTH 281
>02_03_0391 - 18471625-18472125
Length = 166
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -1
Query: 359 RADPAAEPRLRNQLQIPNKRGSYRGHGYFSGRPAHFQEEG 240
+ADPAA PR + P GS RG+G G H Q +G
Sbjct: 114 QADPAASPRCGARFGGPAAAGSGRGYG---GHGHHHQHQG 150
>02_02_0486 - 10856842-10858104
Length = 420
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -1
Query: 377 PQVRDVRADPAAEPRLRNQL-QIPNKRGSYRGHGYFSGRPAHFQEEGGDDDLYS*TVSRS 201
P + R P P L +QL Q+PN R G+ P +++GGDD Y+ V
Sbjct: 144 PLLPPARKPPDLPPNLHSQLHQVPNDARVLRP-GWML-LPEEEEDDGGDDLSYTLVVLIR 201
Query: 200 RPRGI 186
R RG+
Sbjct: 202 RGRGL 206
>08_01_0601 - 5268520-5271112,5272448-5272950
Length = 1031
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 365 LVLADVVVGHGAARELHR-LLEVSAANLRNGVFLVHVHNGSGGL 493
LV D G AA +H+ +L+ + A R+ FL HVH+G+ GL
Sbjct: 550 LVETDAAGGRVAAVSVHQAVLDFAQAEARDTNFL-HVHSGAAGL 592
>07_03_1170 -
24505743-24505875,24506087-24506475,24507133-24507369,
24507967-24508136,24510196-24510316
Length = 349
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 180 GGDAPRSRARHSLAVQVVVTPL 245
GGDA ++ HSL+V V+V+PL
Sbjct: 211 GGDADTTQLYHSLSVPVIVSPL 232
>08_02_1195 - 25149891-25151402,25152194-25152493
Length = 603
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +2
Query: 197 VASETQFSCTGRRHPPPPGSGLVAR*STRAPCSSRVCWESEVGSEAAALLQGLREHLVLA 376
+A+E S + H PP + V +TR + + +E+ + AALLQG A
Sbjct: 1 MAAEATTSSSSSTHHPPHATAAVPAPATRHEIQAAIAKATELRALHAALLQGQGAAAANA 60
Query: 377 DVVVGHGAARELHRL 421
A L RL
Sbjct: 61 GSAYSRSPAASLIRL 75
>03_05_0617 + 26163161-26163595,26163678-26164202
Length = 319
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Frame = +2
Query: 242 PPPGSGLVAR*STRAPCSSRVCWESEVGSEAAALLQGL--REHLV--LADVVVGHGAARE 409
PPP + S R PC E VG A++ GL E LV V VG G R+
Sbjct: 12 PPPIQPAESMFSPRQPCFGAAAGEVVVGGAGGAVMAGLCQEEQLVQGYRQVFVGGGGVRQ 71
>02_01_0716 + 5348720-5349115
Length = 131
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/71 (30%), Positives = 28/71 (39%)
Frame = +2
Query: 89 T*TGRGQAPCWCGGATRRTNRQDVSSGLSRWWRCPEVASETQFSCTGRRHPPPPGSGLVA 268
T TG+G P W G A R R + A+ + T PPP SG +
Sbjct: 15 TGTGKGTTPAWVGKAAPNLRR-------VRQPPRSKTATAASLTWTSMVPTPPPLSGAAS 67
Query: 269 R*STRAPCSSR 301
T AP +SR
Sbjct: 68 SGPTYAPSTSR 78
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 193 RGRERDTV*LYRSSSPPSSWKWAGRPLKYPCPL 291
RGR R T+ PS + GRP KYP P+
Sbjct: 218 RGRPRKTITTSDDHLEPSVKRPRGRPRKYPLPI 250
>07_03_0743 - 21118619-21119071
Length = 150
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +2
Query: 179 WWRCPEVASETQFSCTGRRHPPPPGSGLVAR*STRAPCSSRVCW 310
W RC + A SC P P G+ R R S+R CW
Sbjct: 59 WGRCGDGAGSCSASC-----PRPAVLGMARRRKARPAASARWCW 97
>06_02_0211 -
13043968-13044646,13044752-13045037,13045903-13045979,
13046039-13046139,13046348-13046412,13048296-13048581
Length = 497
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -1
Query: 365 DVRADPAAEPRLRNQLQIPNKRGSYRGHGYFSGRPAHFQEEGGD 234
D+ ADP A N L RG RG GY G + + GD
Sbjct: 441 DLYADPYAGRGRPNNLDDVRGRGRGRGRGYIPGGATYLGKGRGD 484
>04_04_0545 + 26141335-26141793,26141883-26141981
Length = 185
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 299 RVCWESEVGSEAAALLQGLREHLVLADVVVGHGAARELHRLLEVSAANLRNGVFLV 466
R+ + G EA A+++ +LV ++ + REL L SAANL+ ++ +
Sbjct: 73 RITVPEQSGEEAEAVVKLHARNLVRVKGLIDARSWRELQAALRSSAANLKQDLYAI 128
>01_06_1540 -
38111557-38111985,38112087-38112311,38112494-38112854,
38112965-38113058,38113136-38113369,38113891-38113945
Length = 465
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 428 VSAANLRNGVFLVHVHNGSGGLLLATPSRWISARWP 535
V AN+ + L+ + + AT RWIS+RWP
Sbjct: 307 VDIANMCLILHLIGAYQVYAQPIFATMERWISSRWP 342
>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
Length = 278
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 39 AAVCLELHVRCLRHYRIREPAGARRHVGVVGRHAGQ 146
A C +V+C+ + +RE R+H V +AG+
Sbjct: 190 ALYCGVCNVKCMTRFNLREHEAGRKHRDKVASNAGE 225
>04_03_0980 + 21406822-21409496,21410322-21410376
Length = 909
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 386 VGHGAARELHRLLEVSAANLRNGVFLVHVHNGSG 487
V G+ E+ + EV LR+ F+V HNGSG
Sbjct: 31 VDEGSRSEIMSVAEVIDQVLRDHKFMVAFHNGSG 64
>01_06_0604 + 30536172-30537143
Length = 323
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = +2
Query: 161 SSGLSRWWRCPEVASETQFSCTGRRHPPPPGSGLVAR*STRAPCSSRVCWESEVGSEAAA 340
SS S ++ CP + + S +G PPP S R T C R +E GS A+A
Sbjct: 194 SSDSSDFYNCPRKNTRARASVSGPCRAPPPSS----RRGTSQSC--RYSFELPRGSTASA 247
Query: 341 LLQG 352
G
Sbjct: 248 ATDG 251
>01_06_0280 +
28129750-28129868,28130677-28131145,28133605-28133802,
28134168-28134412,28134749-28134907,28135491-28135578,
28135983-28136264
Length = 519
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYE 365
M DE P ++ FEEA+ ++SVS DI K+E
Sbjct: 475 MSKDEISKDP-VAMCDFEEALAKVQKSVSPADIEKHE 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,435,551
Number of Sequences: 37544
Number of extensions: 410031
Number of successful extensions: 1466
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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