Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0506
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        108   4e-24
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)        29   3.6  
SB_2354| Best HMM Match : GRP (HMM E-Value=3.9)                        29   3.6  
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_12879| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)               28   6.3  
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)               28   6.3  
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_2691| Best HMM Match : Luteo_Vpg (HMM E-Value=2.1)                  27   8.3  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  108 bits (259), Expect = 4e-24
 Identities = 53/88 (60%), Positives = 59/88 (67%)
 Frame = -2

Query: 571 KICQRAASWPFAXXXXXXXXXXXXXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFARRSV 392
           +ICQRA                          M++++EDPVPEI + HFEEAMKFARRSV
Sbjct: 505 EICQRACKLAIREAIETDINREKQRVDNPDLDMEVEDEDPVPEIRKDHFEEAMKFARRSV 564

Query: 391 SDNDIRKYEMFAQTLQQSRGFGTNFRFP 308
           SDNDIRKYEMFAQTLQQSRGFG NFRFP
Sbjct: 565 SDNDIRKYEMFAQTLQQSRGFGGNFRFP 592


>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
          Length = 1183

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 96  PAGARRHVGVVGRHAGQTDRTLVLVYRDGGDAPRSRARHSLAVQV 230
           P   +RH G   RHAG  D     +Y D  DA R R   S +++V
Sbjct: 787 PYAEKRHEGNQDRHAGNVD-----IYNDSVDASRVRDYSSSSMRV 826


>SB_2354| Best HMM Match : GRP (HMM E-Value=3.9)
          Length = 216

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 299 GSYRGHGYFSGRPAHFQEEGGDDDL 225
           G Y G G F G  A+  EEG DD L
Sbjct: 174 GEYNGEGGFEGDEAYGYEEGYDDGL 198


>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -2

Query: 463 EEDPVPEISRAHFEEAMKFARRSVSDNDIRKY 368
           EE  +P +++  F+ A+K   +SVSD DI+KY
Sbjct: 478 EELDLP-VNQEDFDMALKKVSKSVSDADIKKY 508


>SB_12879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 170 LSRWWRCPEVASETQFSCTGRRHPPPPGS 256
           L  W   P++ + + FS T +R PPPP +
Sbjct: 503 LEGWLSSPDIEAGSCFSNTKQRPPPPPAT 531


>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
          Length = 267

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 184 PPSR*TRTNVLSVCPACRPTTP 119
           PPS   +    SVCP CRP +P
Sbjct: 214 PPSYSFKDEECSVCPCCRPGSP 235


>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
          Length = 494

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 184 PPSR*TRTNVLSVCPACRPTTP 119
           PPS   +    SVCP CRP +P
Sbjct: 214 PPSYSFKDEECSVCPCCRPGSP 235


>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1837

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = -3

Query: 219  LNCVSLATSGHLHHLDRPELT---SCLFVLRVAPPHQHGAWPRPVH 91
            LNC   ATS  LH+ D+P +T     L   R +    HG  P   H
Sbjct: 1281 LNCPRSATSVRLHNTDKPWITPRIKTLISRRQSALAAHGKDPHEFH 1326


>SB_2691| Best HMM Match : Luteo_Vpg (HMM E-Value=2.1)
          Length = 332

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 383 RHPQVRDVRADPAAEPRLRNQLQIPNKRGSYRGHGYFSGRPAHFQEEGGDD 231
           + P V D  ADP  + +++++L          GHG   G       +GGDD
Sbjct: 82  QRPAVIDESADPDKQNKMQDELSKKKLENLENGHGGGGGSNGEV-SDGGDD 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,616,124
Number of Sequences: 59808
Number of extensions: 410176
Number of successful extensions: 1179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)