Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0506
(575 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC122550-1|AAI22551.1| 475|Homo sapiens VCP protein protein. 102 1e-21
BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 102 1e-21
BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 102 1e-21
BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. 102 1e-21
AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 102 1e-21
AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 102 1e-21
AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 102 1e-21
U78772-1|AAB70460.1| 750|Homo sapiens nuclear VCP-like protein ... 31 2.2
U68140-1|AAB70457.1| 856|Homo sapiens nuclear VCP-like protein ... 31 2.2
BX000476-1|CAI41974.1| 384|Homo sapiens protein phosphatase 2 (... 31 2.2
BC012105-1|AAH12105.1| 659|Homo sapiens NVL protein protein. 31 2.2
AL954664-1|CAI41961.1| 384|Homo sapiens protein phosphatase 2 (... 31 2.2
AL732314-1|CAI41583.1| 384|Homo sapiens protein phosphatase 2 (... 31 2.2
>BC122550-1|AAI22551.1| 475|Homo sapiens VCP protein protein.
Length = 475
Score = 102 bits (244), Expect = 1e-21
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPT 305
M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+
Sbjct: 389 MEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPS 444
>BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 102 bits (244), Expect = 1e-21
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPT 305
M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+
Sbjct: 720 MEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPS 775
>BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 102 bits (244), Expect = 1e-21
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPT 305
M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+
Sbjct: 720 MEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPS 775
>BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein.
Length = 644
Score = 102 bits (244), Expect = 1e-21
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPT 305
M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+
Sbjct: 558 MEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPS 613
>AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 102 bits (244), Expect = 1e-21
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPT 305
M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+
Sbjct: 720 MEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPS 775
>AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic
reticulum ATPase protein.
Length = 806
Score = 102 bits (244), Expect = 1e-21
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPT 305
M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+
Sbjct: 720 MEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPS 775
>AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein.
Length = 806
Score = 102 bits (244), Expect = 1e-21
Identities = 47/57 (82%), Positives = 54/57 (94%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFPT 305
M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGFG +FRFP+
Sbjct: 720 MEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG-SFRFPS 775
>U78772-1|AAB70460.1| 750|Homo sapiens nuclear VCP-like protein
NVLp.1 protein.
Length = 750
Score = 31.5 bits (68), Expect = 2.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 445 EISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 341
++S HFEEA K R S+S D YE ++L +
Sbjct: 716 KVSHKHFEEAFKKVRSSISKKDQIMYERLQESLSR 750
>U68140-1|AAB70457.1| 856|Homo sapiens nuclear VCP-like protein
NVLp.2 protein.
Length = 856
Score = 31.5 bits (68), Expect = 2.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 445 EISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 341
++S HFEEA K R S+S D YE ++L +
Sbjct: 822 KVSHKHFEEAFKKVRSSISKKDQIMYERLQESLSR 856
>BX000476-1|CAI41974.1| 384|Homo sapiens protein phosphatase 2
(formerly 2A), regulatory subunit B'', beta protein.
Length = 384
Score = 31.5 bits (68), Expect = 2.2
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 143 TNRQDVSSGLSRWWRCPEVASETQFSCTGRRHPPP----PGSGLVAR*STRAPCSS 298
T R DV++G W R E S GR PPP P S +R + PC++
Sbjct: 63 TRRSDVNAGALVWERGRRARFEAALSSAGRTAPPPRSPRPASPRSSRGAGPVPCAA 118
>BC012105-1|AAH12105.1| 659|Homo sapiens NVL protein protein.
Length = 659
Score = 31.5 bits (68), Expect = 2.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 445 EISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 341
++S HFEEA K R S+S D YE ++L +
Sbjct: 625 KVSHKHFEEAFKKVRSSISKKDQIMYERLQESLSR 659
>AL954664-1|CAI41961.1| 384|Homo sapiens protein phosphatase 2
(formerly 2A), regulatory subunit B'', beta protein.
Length = 384
Score = 31.5 bits (68), Expect = 2.2
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 143 TNRQDVSSGLSRWWRCPEVASETQFSCTGRRHPPP----PGSGLVAR*STRAPCSS 298
T R DV++G W R E S GR PPP P S +R + PC++
Sbjct: 63 TRRSDVNAGALVWERGRRARFEAALSSAGRTAPPPRSPRPASPRSSRGAGPVPCAA 118
>AL732314-1|CAI41583.1| 384|Homo sapiens protein phosphatase 2
(formerly 2A), regulatory subunit B'', beta protein.
Length = 384
Score = 31.5 bits (68), Expect = 2.2
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 143 TNRQDVSSGLSRWWRCPEVASETQFSCTGRRHPPP----PGSGLVAR*STRAPCSS 298
T R DV++G W R E S GR PPP P S +R + PC++
Sbjct: 63 TRRSDVNAGALVWERGRRARFEAALSSAGRTAPPPRSPRPASPRSSRGAGPVPCAA 118
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,421,672
Number of Sequences: 237096
Number of extensions: 1973825
Number of successful extensions: 5729
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5718
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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