Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0506
(575 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 106 1e-23
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 104 4e-23
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 104 4e-23
U58750-2|AAB00642.1| 615|Caenorhabditis elegans Polo kinase pro... 29 3.1
AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical ... 29 3.1
AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival... 29 3.1
AF059024-1|AAC14425.1| 615|Caenorhabditis elegans polo-like kin... 29 3.1
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 28 5.5
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 28 5.5
AF045639-5|AAC02569.2| 937|Caenorhabditis elegans Osmotic avoid... 27 7.2
AF031408-1|AAB87064.1| 937|Caenorhabditis elegans olfactory cha... 27 7.2
AF016654-1|AAB66028.1| 731|Caenorhabditis elegans Hypothetical ... 27 7.2
U00063-2|AAK18961.1| 329|Caenorhabditis elegans Hypothetical pr... 27 9.5
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 106 bits (255), Expect = 1e-23
Identities = 48/57 (84%), Positives = 53/57 (92%)
Frame = -2
Query: 478 VMDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFP 308
+M+ D DPVPEI+RAHFEEAMKFARRSV+DNDIRKYEMFAQTLQQSRGFG NF+FP
Sbjct: 730 LMEDDAVDPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFP 786
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 104 bits (250), Expect = 4e-23
Identities = 47/57 (82%), Positives = 53/57 (92%)
Frame = -2
Query: 478 VMDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFP 308
+M+ + DPVPEI+RAHFEEAMKFARRSV+DNDIRKYEMFAQTLQQSRGFG NF+FP
Sbjct: 728 LMEDELADPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFP 784
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 575 TEDMPASCKLAIRQAIERRSIAKESPAASRRCR 477
TE +CKLAIR++IE R I +E R R
Sbjct: 693 TEICQRACKLAIRESIE-REIRQEKERQDRSAR 724
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 104 bits (250), Expect = 4e-23
Identities = 47/57 (82%), Positives = 53/57 (92%)
Frame = -2
Query: 478 VMDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFP 308
+M+ + DPVPEI+RAHFEEAMKFARRSV+DNDIRKYEMFAQTLQQSRGFG NF+FP
Sbjct: 728 LMEDELADPVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFP 784
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 575 TEDMPASCKLAIRQAIERRSIAKESPAASRRCR 477
TE +CKLAIR++IE R I +E R R
Sbjct: 693 TEICQRACKLAIRESIE-REIRQEKERQDRSAR 724
>U58750-2|AAB00642.1| 615|Caenorhabditis elegans Polo kinase
protein 3 protein.
Length = 615
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -1
Query: 398 LRVRQRHPQVRDVRADPAAEPRLRNQLQIPNKRGSYRGHGYFS 270
LR R Q ++ + P P + + +Q+P ++G++ G G F+
Sbjct: 5 LRTRGNSAQDKNKKHVPNVPPIIYDDMQVPYEKGAFLGEGGFA 47
>AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical
protein Y48C3A.7 protein.
Length = 813
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 469 MDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYE 365
++ ++ V + HF EA R SV++ D +KYE
Sbjct: 763 LENDESVKGVGMRHFREAASRIRPSVTEADRKKYE 797
>AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival
CED-4-interactingprotein MAC-1 protein.
Length = 813
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 469 MDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYE 365
++ ++ V + HF EA R SV++ D +KYE
Sbjct: 763 LENDESVKGVGMRHFREAASRIRPSVTEADRKKYE 797
>AF059024-1|AAC14425.1| 615|Caenorhabditis elegans polo-like kinase
protein.
Length = 615
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -1
Query: 398 LRVRQRHPQVRDVRADPAAEPRLRNQLQIPNKRGSYRGHGYFS 270
LR R Q ++ + P P + + +Q+P ++G++ G G F+
Sbjct: 5 LRTRGNSAQDKNKKHVPNVPPIIYDDMQVPYEKGAFLGEGGFA 47
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 326 NQLQIPNKRGSYRGHGYFSGRPAHFQE 246
N + P +RG +RG G GR HF +
Sbjct: 37 NDAKQPARRGGFRGRGRGRGRGGHFYQ 63
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 326 NQLQIPNKRGSYRGHGYFSGRPAHFQE 246
N + P +RG +RG G GR HF +
Sbjct: 37 NDAKQPARRGGFRGRGRGRGRGGHFYQ 63
>AF045639-5|AAC02569.2| 937|Caenorhabditis elegans Osmotic
avoidance abnormal protein9 protein.
Length = 937
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 365 DVRADPAAEPRLRNQLQIPNKRGSYRGHGYFSGRPAHFQEEGGDDDLY 222
DV A L ++ NK Y+G+ Y+ P F G+ D+Y
Sbjct: 197 DVNARACGNFFLPEDFKLTNKITDYQGYAYYGEYPLAFAACFGNKDIY 244
>AF031408-1|AAB87064.1| 937|Caenorhabditis elegans olfactory
channel protein.
Length = 937
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 365 DVRADPAAEPRLRNQLQIPNKRGSYRGHGYFSGRPAHFQEEGGDDDLY 222
DV A L ++ NK Y+G+ Y+ P F G+ D+Y
Sbjct: 197 DVNARACGNFFLPEDFKLTNKITDYQGYAYYGEYPLAFAACFGNKDIY 244
>AF016654-1|AAB66028.1| 731|Caenorhabditis elegans Hypothetical
protein C17A2.5 protein.
Length = 731
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -1
Query: 128 HHTNMAPGPGRFTYAIV 78
+HT++ PGPG+F A++
Sbjct: 491 NHTSLEPGPGKFKLAVI 507
>U00063-2|AAK18961.1| 329|Caenorhabditis elegans Hypothetical
protein F56C9.6 protein.
Length = 329
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 410 VRAPLRVRQRHPQVRDVRADPAAEPRLRN 324
V +P+R+ QR+P+ D P++EP+ N
Sbjct: 266 VPSPIRIGQRYPKRPDNMPKPSSEPKHLN 294
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,109,088
Number of Sequences: 27780
Number of extensions: 274755
Number of successful extensions: 805
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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