Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0506
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.54 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.9  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   6.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.6  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 107 QAPCWCGGATRRTNRQDVSSGLSRWWRCPEV 199
           Q   W G      N  D + G  R+WR P V
Sbjct: 258 QTKGWDGSNMVEGNESDHNDGRLRYWRTPSV 288


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 400 RSVSDNDIRKYEMF 359
           +S +D+DI KY+MF
Sbjct: 190 KSCTDSDIEKYKMF 203


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 479 GSGGLLLATPSRWISARWP 535
           GS GLL    S + + RWP
Sbjct: 764 GSQGLLQCATSNYSTTRWP 782


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 510 EGVASSKPPLPLWTWTR 460
           +G AS+  P PL+ W R
Sbjct: 249 QGAASANLPSPLYPWMR 265


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 398 LRVRQRHPQVRDVRADPAAEPRLRNQ 321
           ++V Q+   + D   DP++EP + +Q
Sbjct: 110 MQVPQQGASIDDSDPDPSSEPTVHSQ 135


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 398 LRVRQRHPQVRDVRADPAAEPRLRNQ 321
           ++V Q+   + D   DP++EP + +Q
Sbjct: 558 MQVPQQGASIDDSDPDPSSEPTVHSQ 583


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 329 RNQLQIPNKRGSYRGHGYFS 270
           R +   P+K  +YR HGY S
Sbjct: 603 RMRYAAPHKAFTYRMHGYAS 622


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,434
Number of Sequences: 438
Number of extensions: 3445
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)