Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0506
(575 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 86 1e-17
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 85 2e-17
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 84 7e-17
At4g27340.1 68417.m03923 Met-10+ like family protein ; contains... 31 0.73
At3g63100.1 68416.m07087 glycine-rich protein 30 1.3
At5g16440.1 68418.m01921 isopentenyl-diphosphate delta-isomerase... 29 2.2
At3g02780.1 68416.m00270 isopentenyl-diphosphate delta-isomerase... 28 3.9
At4g16765.1 68417.m02532 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 5.1
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF... 27 6.8
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 27 9.0
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 86.2 bits (204), Expect = 1e-17
Identities = 40/56 (71%), Positives = 47/56 (83%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRFP 308
M+ DEE+ + EI HFEE+MK+ARRSVSD DIRKY+ FAQTLQQSRGFG+ FRFP
Sbjct: 724 MEEDEEE-IAEIKAGHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 778
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 85.4 bits (202), Expect = 2e-17
Identities = 40/55 (72%), Positives = 45/55 (81%)
Frame = -2
Query: 475 MDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFRF 311
M+ D D V EI AHFEE+MK+ARRSVSD DIRKY+ FAQTLQQSRGFG+ FRF
Sbjct: 724 MEEDGVDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 83.8 bits (198), Expect = 7e-17
Identities = 44/87 (50%), Positives = 53/87 (60%)
Frame = -2
Query: 571 KICQRAASWPFAXXXXXXXXXXXXXXXXXXAVMDMDEEDPVPEISRAHFEEAMKFARRSV 392
+ICQRA + A+ + +D V EI AHFEE+MK+ARRSV
Sbjct: 692 EICQRACKYAIRENIEKDIENERRRSQNPEAMEEDMVDDEVSEIRAAHFEESMKYARRSV 751
Query: 391 SDNDIRKYEMFAQTLQQSRGFGTNFRF 311
SD DIRKY+ FAQTLQQSRGFG+ FRF
Sbjct: 752 SDADIRKYQAFAQTLQQSRGFGSEFRF 778
>At4g27340.1 68417.m03923 Met-10+ like family protein ; contains
Pfam profile PF02475: Met-10+ like-protein
Length = 619
Score = 30.7 bits (66), Expect = 0.73
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 296 SRVCWESEVGSEAAALLQGLREHLVLADVVVGHG 397
+RV W S++G+E LL G ++ V+ DV G G
Sbjct: 422 ARVYWNSKLGTERQRLLLGFDQNDVVCDVFAGVG 455
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 308 NKRGSYRGHGYFSGRPAHFQEEG 240
++RG RGHG+ GR H QE G
Sbjct: 133 HRRGRGRGHGHGRGRGGHVQEAG 155
>At5g16440.1 68418.m01921 isopentenyl-diphosphate delta-isomerase I
/ isopentenyl diphosphate:dimethylallyl diphosphate
isomerase I (IPP1) identical to SP|Q38929
Length = 233
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = +2
Query: 377 DVVVGHGAARELHRLLEVSAANLRNGVFLVHVHNGSGGLLLATPSRWISARWPGEW--PA 550
D VVGH H + ++ A NL + F V + N LLL S+ +P W
Sbjct: 29 DRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSK-TKVTFPLVWTNTC 87
Query: 551 CSSLAY 568
CS Y
Sbjct: 88 CSHPLY 93
>At3g02780.1 68416.m00270 isopentenyl-diphosphate delta-isomerase II
/ isopentenyl diphosphate:dimethylallyl diphosphate
isomerase II (IPP2) identical to isopentenyl
diphosphate:dimethylallyl diphosphate isomerase (IPP2)
GB:U49259 [Arabidopsis thaliana]
Length = 284
Score = 28.3 bits (60), Expect = 3.9
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +2
Query: 377 DVVVGHGAARELHRLLEVSAANLRNGVFLVHVHNGSGGLLLATPSRWISARWPGEW--PA 550
D VVGH + H + + A NL + F V + N LLL S +P W
Sbjct: 80 DRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSN-TKVTFPLVWTNTC 138
Query: 551 CSSLAY 568
CS Y
Sbjct: 139 CSHPLY 144
>At4g16765.1 68417.m02532 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to SP|P40902 isp7 from
Schizosaccharomyces pombe, GI:475959
flavanone-3-hydroxylase (naringenin 3-dioxygenase) from
Medicago sativa, GI:1944197 flavanone 3-hydroxylase from
Perilla frutescens; contains Pfam profile PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 247
Score = 27.9 bits (59), Expect = 5.1
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 100 PG-PGAMLVWWGDTQDKQTGR*FWSIEMVEMPRGRERDTV*LYRSSSPPSSWKWAGRPLK 276
PG GA +V GD ++ T F S MP G+ER +V + +P + K
Sbjct: 161 PGIKGAFIVNIGDMMERWTNGLFRSTLHRVMPVGKERYSVVFFLDPNPDCNVKCLESCCS 220
Query: 277 YPCPL*LPRLL 309
CP P +L
Sbjct: 221 ETCPPRFPPIL 231
>At1g78310.1 68414.m09126 VQ motif-containing protein contains
PF05678: VQ motif
Length = 311
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 176 RWWRCPEVASETQFSCTGRRHPPPPGSGLVAR*STRAP 289
RW++ E A +Q + HPPPP S + T P
Sbjct: 224 RWYQQQENAPPSQHNSFPPPHPPPPSSAVSQTVPTSIP 261
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -2
Query: 478 VMDMDEEDPVPE-ISRAHFEEAMKFARRSVSDNDIRKYE 365
+ +M ++D + ++ FEEA++ + SVS +DI K+E
Sbjct: 476 IKNMSKDDISNDPVAMCDFEEAIRKVQPSVSSSDIEKHE 514
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,613,925
Number of Sequences: 28952
Number of extensions: 268039
Number of successful extensions: 725
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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