Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0505
(358 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc... 43 1e-05
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 31 0.040
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 2.0
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 2.0
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 2.6
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 3.5
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 4.6
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 25 4.6
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 24 6.1
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc... 24 6.1
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 24 8.0
>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 43.2 bits (97), Expect = 1e-05
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +2
Query: 68 NREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYE 187
+RED L++FC+ D + +FFLES+NW ++A + +E
Sbjct: 2 DREDILKEFCNRNNIDVSQGRFFLESTNWNYELATALLHE 41
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 31.5 bits (68), Expect = 0.040
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = +2
Query: 59 MSANREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGG 196
M + + FC +T + ++++ +L ++ L A++ F+E+GG
Sbjct: 1 MDGDEASLVANFCAITNSTPEKAQEYLSVADGDLSTAITLFFESGG 46
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 2.0
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -2
Query: 243 ENDAALVGLAGASYALPPFS*KLERATSNCQFEDSKKNLLRSSSAPVTSQN 91
EN+ + L S + P S E+ T Q ED++ + S+ P ++N
Sbjct: 460 ENETEIASLDEGSESKPTPSPPAEQLTDQKQNEDNEDKVKADSNGPTQNEN 510
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 2.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 185 ENGGNAYEAPANPTSAASFSVLPAA 259
+N G ++ PA P SAA + PAA
Sbjct: 9 QNSGFSFGKPAQPNSAAQGAATPAA 33
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.4 bits (53), Expect = 2.6
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 194 GNAYEAPANPTSA-ASFSVLPAAIWN 268
G+ YE P NPT A A L AI+N
Sbjct: 360 GSVYEVPLNPTQALAVRDALSMAIYN 385
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.0 bits (52), Expect = 3.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 153 QFEDSKKNLLRSSSAPVTSQN*RNVSSLFADMVISNIYFVLIYK 22
+F +NL +++AP T + R SS A S +Y YK
Sbjct: 356 EFAGFSRNLTNTAAAPTTYEYKRPTSSYTAKDATSKVYRSNTYK 399
>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 24.6 bits (51), Expect = 4.6
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +3
Query: 228 VRHHSLFYQQRYGITTRLTSGAKVPEKRKNENLKYKVWDHRI 353
++ L + GIT + A + + EN+ YK W H I
Sbjct: 205 IKSSLLEFLDEQGITVKFMK-ALISRSWRKENVSYKHWIHNI 245
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 4.6
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +2
Query: 146 SNWQLDVALSSFYENGGNAYEAPANPTSAAS 238
S W A S FY N N Y+ P + +S
Sbjct: 690 SRWMAMGAFSPFYRNHNNIYQISQEPYTWSS 720
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 24.2 bits (50), Expect = 6.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 194 GNAYEAPANPTSAASFSVLPAAI 262
G+ ++P P+S++SFSV P ++
Sbjct: 175 GDYSDSPLEPSSSSSFSVPPESL 197
>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
precursor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 24.2 bits (50), Expect = 6.1
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 92 FCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNAYEAP 214
FC+V GADE S+ S++ + ++ G N P
Sbjct: 75 FCEVLGADEAASQLAAHYSSFYTESDFATIASWGVNVLRIP 115
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 23.8 bits (49), Expect = 8.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 29 INTKYIFEITMSANREDTLRQFCDVTGADEDRSKFFLESSN 151
+N+KY+FE +S + + D + + ED+S ES N
Sbjct: 604 LNSKYVFEDEVSEYMQQSNLNTSDKSMSMEDQSGKVTESVN 644
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,432,446
Number of Sequences: 5004
Number of extensions: 26231
Number of successful extensions: 79
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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