Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0505
(358 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556... 46 9e-06
04_04_1541 + 34249778-34249882,34249964-34250115,34250225-342503... 37 0.005
10_08_0654 - 19616426-19616656,19617046-19617249,19617654-196178... 33 0.087
06_01_0903 - 6939672-6939782,6940051-6940110,6940221-6940322,694... 32 0.15
12_02_0385 + 18424617-18425594,18426811-18426850,18427581-184276... 30 0.61
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257 30 0.61
02_05_0092 + 25749070-25750638 28 1.9
08_02_1473 - 27358162-27358275,27358968-27359024,27359102-273592... 28 2.5
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 28 2.5
11_03_0013 - 8957277-8957355,8957485-8957591,8957700-8957915,895... 27 5.7
03_02_0413 - 8224494-8224553,8224838-8225004,8225666-8225771,822... 26 7.6
>06_03_0850 -
25354002-25354391,25354480-25354575,25355352-25355634,
25357213-25357799
Length = 451
Score = 46.0 bits (104), Expect = 9e-06
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 62 SANREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENG-GNAYEAPAN 220
+A + + FC VT A + FFLES NW L+ A+ SFY++ G+A A A+
Sbjct: 12 AAEAQSLVESFCGVTSATPQEAAFFLESHNWALESAVRSFYDSADGDASAAAAD 65
>04_04_1541 +
34249778-34249882,34249964-34250115,34250225-34250350,
34251868-34252030,34252601-34252678,34252749-34252847,
34253045-34253188,34253344-34253446,34255303-34255646,
34255727-34255891
Length = 492
Score = 36.7 bits (81), Expect = 0.005
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 65 ANREDTLRQFCDVT-GADEDRSKFFLESSNWQLDVALSSFYENGGNAYEAPANPTSAASF 241
A +E + F ++ G + + FL+ ++W L+ AL FY +G A A P+ AA+
Sbjct: 9 AEKESLVTSFLEIAAGQTPETATQFLQMTSWHLEEALQLFYIDGEAALAAHPAPSPAAAA 68
Query: 242 SVLPAAI 262
AA+
Sbjct: 69 EAAAAAV 75
>10_08_0654 -
19616426-19616656,19617046-19617249,19617654-19617824,
19619617-19620411
Length = 466
Score = 32.7 bits (71), Expect = 0.087
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 59 MSANREDTLRQFCDVTG-ADEDRSKFFLESSNWQLDVALSSFYENGGNAYEAPANP 223
M+ +D + F VTG +D D L + NW L +A+SS N + AP+ P
Sbjct: 1 MAETVDDKVSYFQAVTGISDHDLCTEILAAHNWDLQLAVSSITANPSSPDPAPSAP 56
>06_01_0903 -
6939672-6939782,6940051-6940110,6940221-6940322,
6940464-6940513,6940686-6940750,6940849-6940931,
6941117-6941140,6941798-6941856,6942041-6942174,
6942823-6942884,6942908-6942976
Length = 272
Score = 31.9 bits (69), Expect = 0.15
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 77 DTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFY 184
D ++QF +TGA E + L++S+W L+ A FY
Sbjct: 32 DKVQQFMTITGASEKVALQALKASDWHLEGAFDFFY 67
>12_02_0385 +
18424617-18425594,18426811-18426850,18427581-18427636,
18428032-18428151
Length = 397
Score = 29.9 bits (64), Expect = 0.61
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = -3
Query: 290 T*GETGGDSISLLVEQRMMPHSLD*LEPHMHYHRSHRNLKEQHLIASLRILKR 132
T G T +S SLL +R +P S PH H+H HR L+++ + LR+ +R
Sbjct: 68 TAGPTAAESASLL--RRGLPTSSK--LPHHHHHHRHRQLRDE--LRGLRLGER 114
>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
Length = 921
Score = 29.9 bits (64), Expect = 0.61
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 30 LIQNIYSKLPCLRIGKIHYVSFVMLP 107
LI NI KLPCLR+ + Y LP
Sbjct: 404 LIDNILPKLPCLRVLDLSYTQLESLP 429
>02_05_0092 + 25749070-25750638
Length = 522
Score = 28.3 bits (60), Expect = 1.9
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 92 FCDVTGA-DEDRSKFFLESSNWQLDVALSSFYENGGNAYEAPANPTSAASFSVLPAAI 262
F ++T ++ + L S W LD AL+ ++ GG APA P A + PAA+
Sbjct: 10 FMEITSCGSQEAAVQHLASCRWDLDAALNRYFIFGGVLAAAPA-PAPVADVAP-PAAL 65
>08_02_1473 -
27358162-27358275,27358968-27359024,27359102-27359245,
27359770-27359934,27360020-27360208,27360301-27360535,
27360826-27360932,27361020-27361103,27361185-27361695,
27361793-27361854,27363373-27363456
Length = 583
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 74 EDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGG-NAYEAPANP 223
+D + F +TGADE + LE + L+ A+++++ G + A NP
Sbjct: 6 QDAIDTFVGITGADEAVAARKLEEHHGDLNEAVNAYFNEGDRTSTRANENP 56
>02_05_0888 -
32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 143 SSNWQLDV-ALSSFYENGGNAYEAPANPTSAA 235
SSNW L V A YE GG E + P +A+
Sbjct: 358 SSNWDLSVGAAELIYEQGGYFSEVSSTPATAS 389
>11_03_0013 -
8957277-8957355,8957485-8957591,8957700-8957915,
8958191-8958907,8959483-8959656,8960292-8960546
Length = 515
Score = 26.6 bits (56), Expect = 5.7
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +3
Query: 63 LRIGKIHYVSFVMLPVLTK--IAVNSF*NPQTGN*MLLFQVSMRTVVMHMRLQLIQRVRH 236
L +G I+ MLP + K I + PQ G + L + R +++++++ R+
Sbjct: 303 LYVGTINLQDGEMLPCVPKSLIRPTNTDMPQDGLLLWLEEHLRRLQNGMIKIRMLKTSRY 362
Query: 237 HSLFYQQRYGITTRLTSGAKV 299
SLF + T+ +T+G KV
Sbjct: 363 ISLFPEASPSCTSAMTNGVKV 383
>03_02_0413 -
8224494-8224553,8224838-8225004,8225666-8225771,
8226068-8226105,8226177-8226264,8226688-8226741,
8226810-8226918,8227280-8227362,8227444-8227506,
8227585-8227647,8227906-8227977,8228056-8228094,
8228182-8228237,8228316-8228375,8228444-8228558,
8228590-8228810,8228978-8229259,8229390-8229504
Length = 596
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 282 TSGAKVPEKRKNENLKYKV 338
TSG+KVP +RK NL +V
Sbjct: 279 TSGSKVPSRRKASNLAKRV 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,941,708
Number of Sequences: 37544
Number of extensions: 161486
Number of successful extensions: 439
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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