Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0505
(358 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.001
SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06) 31 0.36
SB_34771| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.36
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.36
SB_54572| Best HMM Match : CARDB (HMM E-Value=4.4) 29 1.5
SB_13200| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.4
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_21442| Best HMM Match : p450 (HMM E-Value=0) 27 5.9
SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_12474| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11) 26 7.8
SB_24228| Best HMM Match : Ion_trans (HMM E-Value=4.5e-33) 26 7.8
>SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 38.7 bits (86), Expect = 0.001
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 74 EDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYE 187
++TL +F D TGAD ++ FL+ +NW + AL +F E
Sbjct: 2 DETLSRFVDRTGADPALARDFLQGTNWNFEEALKAFQE 39
>SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06)
Length = 825
Score = 30.7 bits (66), Expect = 0.36
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 50 EITMSANREDTLRQFCDVTGADEDRSKFFLES 145
++T S N E+TL DV +++ R ++F+ES
Sbjct: 271 KLTESGNTEETLLSVTDVVDSEDGRDEYFMES 302
>SB_34771| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 30.7 bits (66), Expect = 0.36
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 59 MSANREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYEN 190
+ +++ + +RQF T +E + L +W+LDVA ++++N
Sbjct: 4 LKSSQREKVRQFIAFTETNERTAITCLNQHDWRLDVASDNYFQN 47
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 30.7 bits (66), Expect = 0.36
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 50 EITMSANREDTLRQFCDVTGADEDRSKFFLES 145
++T S N E+TL DV +++ R ++F+ES
Sbjct: 249 KLTESGNTEETLLSVTDVVDSEDGRDEYFMES 280
>SB_54572| Best HMM Match : CARDB (HMM E-Value=4.4)
Length = 292
Score = 28.7 bits (61), Expect = 1.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 131 FFLESSNWQLDVALSSFYE 187
FFL+ +NW L A+ +FY+
Sbjct: 45 FFLDMANWNLQAAIGAFYD 63
>SB_13200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 27.5 bits (58), Expect = 3.4
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 261 IAAGRTENDAALVGLAGASYALPP-FS*KLERATSNCQFEDSKKNLLRSSSAPVT 100
++A T +D A A Y P +S ++ R TS + N+ RSSS PVT
Sbjct: 128 VSASTTGSDRATAS-ASDEYTSPSSYSARVTRPTSGATHYPTDANVNRSSSEPVT 181
>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2835
Score = 26.6 bits (56), Expect = 5.9
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 206 HMHYHRSHRNLKEQHL 159
H+ YH SH+N+ + HL
Sbjct: 1809 HLFYHASHKNITDGHL 1824
>SB_21442| Best HMM Match : p450 (HMM E-Value=0)
Length = 565
Score = 26.6 bits (56), Expect = 5.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -3
Query: 194 HRSHRNLKEQHLIASLRILKRIYCDLRQHR*HHKTDVMYLPYS 66
HR R +E+ +I + K +Y + + HH +DV P++
Sbjct: 374 HRHLRECEEECVINGVTFSKGVYVQIPTYSIHHDSDVWPDPFT 416
>SB_40460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 26.6 bits (56), Expect = 5.9
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +2
Query: 89 QFCDVTGADEDRSKFFLESSNWQLDVALSSFYE 187
Q C +TG +E+ KF L W + ++ ++
Sbjct: 796 QVCSLTGVNEEEVKFHLGHCGWDIQRTVNYIFD 828
>SB_12474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 284 GETGGDSISLLVEQRMMPHSLD*LEPHMH 198
GE +I VEQ +P +D L PHMH
Sbjct: 1283 GENERLTIKSKVEQSRLPPCIDNLVPHMH 1311
>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
Length = 1500
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 186 RTVVMHMRLQLIQRV--RHHSLFYQQRYGITTRLTSGAKVPEKRKNE 320
+T ++H R + + RH S +QQ +T++L ++ ++ KN+
Sbjct: 878 KTTLLHERCEARSTITQRHFSFCFQQLSKLTSQLQQSTQLNQRLKND 924
>SB_24228| Best HMM Match : Ion_trans (HMM E-Value=4.5e-33)
Length = 663
Score = 26.2 bits (55), Expect = 7.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 113 DEDRSKFFLESSNWQLDVALSSFYENGGNAYEAPAN 220
D R ++F + N + + FY+NGGN Y P N
Sbjct: 94 DSKRKEYFFDR-NRTVAECIYQFYQNGGNIYR-PEN 127
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,389,012
Number of Sequences: 59808
Number of extensions: 185721
Number of successful extensions: 509
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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