Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0505
(358 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15410.1 68417.m02355 UBX domain-containing protein low simil... 47 4e-06
At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N domain-... 41 3e-04
At3g12760.1 68416.m01593 expressed protein similar to RP42 prote... 38 0.003
At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N domain-... 36 0.010
At1g05040.1 68414.m00505 hypothetical protein 34 0.032
At1g72880.2 68414.m08430 acid phosphatase survival protein SurE,... 28 2.1
At1g72880.1 68414.m08429 acid phosphatase survival protein SurE,... 28 2.1
At1g14570.2 68414.m01733 UBX domain-containing protein contains ... 28 2.1
At1g14570.1 68414.m01732 UBX domain-containing protein contains ... 28 2.1
At4g10790.1 68417.m01759 UBX domain-containing protein low simil... 27 2.8
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 27 4.9
At1g16230.1 68414.m01944 syntaxin-related family protein similar... 27 4.9
At3g54010.2 68416.m05972 peptidyl-prolyl cis-trans isomerase, pu... 26 6.4
At3g54010.1 68416.m05971 peptidyl-prolyl cis-trans isomerase, pu... 26 6.4
At1g79650.2 68414.m09288 DNA repair protein RAD23, putative simi... 26 6.4
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ... 26 6.4
At4g20000.1 68417.m02928 VQ motif-containing protein contains PF... 26 8.5
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 26 8.5
At1g54310.2 68414.m06192 expressed protein 26 8.5
At1g51600.2 68414.m05811 zinc finger (GATA type) family protein ... 26 8.5
At1g51600.1 68414.m05810 zinc finger (GATA type) family protein ... 26 8.5
At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase fam... 26 8.5
>At4g15410.1 68417.m02355 UBX domain-containing protein low
similarity to XY40 protein [Rattus norvegicus]
GI:2547025; contains Pfam profile PF00789: UBX domain
Length = 421
Score = 46.8 bits (106), Expect = 4e-06
Identities = 24/70 (34%), Positives = 35/70 (50%)
Frame = +2
Query: 74 EDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNAYEAPANPTSAASFSVLP 253
E+ + F ++T + + + FFLES W LD A+S+F +N A P NPT S
Sbjct: 7 ENLINSFIEITSSSREEANFFLESHTWNLDAAVSTFLDNDAAAAAEP-NPTGPPPPSSTI 65
Query: 254 AAIWNHHPSH 283
A + SH
Sbjct: 66 AGAQSPSQSH 75
>At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N
domain-containing protein contains Pfam profile PF00627:
UBA/TS-N domain
Length = 649
Score = 40.7 bits (91), Expect = 3e-04
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 68 NREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFYENGGNAYEAPANP 223
N+E+ ++QFC++ G D + +LE W L VA+ F + +NP
Sbjct: 426 NKEEIIKQFCEIVGLHPDVAVAYLERCQWSLQVAIDYFMNEAYFTEDVTSNP 477
>At3g12760.1 68416.m01593 expressed protein similar to RP42 protein
[Homo sapiens] GI:9896486; contains Pfam profile
PF00627: UBA/TS-N domain, PF03556: Domain of unknown
function (DUF298)
Length = 250
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 59 MSANREDTLRQFCDVTGADEDRSKFFLESSNWQLDVALSSFY 184
+S + D L+QF +TGA E + L++S+W L+ A FY
Sbjct: 4 LSRSNRDKLQQFVAITGASEKNALQALKASDWHLEAAFDVFY 45
>At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N
domain-containing protein-related contains weak hit to
Pfam F00627: UBA/TS-N domain; supported by tandem
duplication of ubiquitin-associated (UBA)/TS-N domain
protein (GI:2924790) (TIGR_Ath1:At2g33010) [Arabidopsis
thaliana]
Length = 508
Score = 35.5 bits (78), Expect = 0.010
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +2
Query: 68 NREDTLRQFC-DVTGADEDRSKFFLESSNWQLDVALSSF-YENGGNAYEAPANP 223
+R +++ +FC V G + ++ +LE SNW +++A+ SF E + +NP
Sbjct: 100 SRNESIARFCYAVAGVSVEEARAYLERSNWNINLAVDSFLVERRATPLQKKSNP 153
>At1g05040.1 68414.m00505 hypothetical protein
Length = 166
Score = 33.9 bits (74), Expect = 0.032
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 74 EDT-LRQFCDVTGADEDRSKFFLESSNWQLDVALSSF 181
EDT + +FC T A +D + ++LE +W L+ A+S F
Sbjct: 4 EDTNVTRFCKATSACKDAAFYYLEGFDWNLEDAISGF 40
>At1g72880.2 68414.m08430 acid phosphatase survival protein SurE,
putative similar to Swiss-Prot:P36664 acid phosphatase
surE (EC 3.1.3.2) (Stationary-phase survival protein
surE) [Escherichia coli O157:H7]; contains Pfam domain
PF01975: Survival protein SurE
Length = 385
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 161 DVALSSFYENGGNAYEAPANPTSAASFSVLPAAIWNHHPS 280
D+A F ++ E P +P+S F V ++W +PS
Sbjct: 220 DIAKGVFPKDCSLNIEIPTSPSSNKGFKVTKQSMWRQYPS 259
>At1g72880.1 68414.m08429 acid phosphatase survival protein SurE,
putative similar to Swiss-Prot:P36664 acid phosphatase
surE (EC 3.1.3.2) (Stationary-phase survival protein
surE) [Escherichia coli O157:H7]; contains Pfam domain
PF01975: Survival protein SurE
Length = 385
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 161 DVALSSFYENGGNAYEAPANPTSAASFSVLPAAIWNHHPS 280
D+A F ++ E P +P+S F V ++W +PS
Sbjct: 220 DIAKGVFPKDCSLNIEIPTSPSSNKGFKVTKQSMWRQYPS 259
>At1g14570.2 68414.m01733 UBX domain-containing protein contains
Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin
interaction motif
Length = 468
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +2
Query: 62 SANREDTLRQFCDVT-GADEDRSKFFLESSNWQLDVALSSFYENGGNAYEAPANPTSAAS 238
S +++ + F ++ G + ++ FL++++W+L+ A+ FY T AS
Sbjct: 7 SGDQQRLVSSFLEIAVGQTAETARQFLQATSWKLEEAIQLFYIGNEGGMLQSGTHTQPAS 66
Query: 239 FSVLPAAIW 265
A W
Sbjct: 67 NDDAAAQSW 75
>At1g14570.1 68414.m01732 UBX domain-containing protein contains
Pfam profiles PF00789: UBX domain, PF02809: Ubiquitin
interaction motif
Length = 468
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +2
Query: 62 SANREDTLRQFCDVT-GADEDRSKFFLESSNWQLDVALSSFYENGGNAYEAPANPTSAAS 238
S +++ + F ++ G + ++ FL++++W+L+ A+ FY T AS
Sbjct: 7 SGDQQRLVSSFLEIAVGQTAETARQFLQATSWKLEEAIQLFYIGNEGGMLQSGTHTQPAS 66
Query: 239 FSVLPAAIW 265
A W
Sbjct: 67 NDDAAAQSW 75
>At4g10790.1 68417.m01759 UBX domain-containing protein low
similarity to SP|Q9UNN5 FAS-associated factor 1 (FAF1
protein) {Homo sapiens}; contains Pfam profile PF00789:
UBX domain
Length = 480
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 77 DTLRQFCDVTGA-DEDRSKFFLESSNWQLDVALSSFYENGGNA 202
D L F +TG D D L++ W L++A+SSF + +A
Sbjct: 6 DKLGYFQAITGLEDADLCTEILQAHGWDLELAISSFTSSDQDA 48
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 143 SSNWQLDVALSSFYENGGNAYEAPANPTSAASFSV 247
+S WQ +++ FY NG ++ + AN ++ S+
Sbjct: 573 NSGWQFNLSNDKFYMNGKSSQQLQANTNKSSVHSL 607
>At1g16230.1 68414.m01944 syntaxin-related family protein similar to
syntaxin of plants 51 [Arabidopsis thaliana]
GI:13811644, syntaxin of plants 52 [Arabidopsis
thaliana] GI:13811646
Length = 193
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 198 MHMRLQLIQRVRHHSLFYQQRYGITTRLTSG 290
+ M + + RV+H++L ++ G+ TRL G
Sbjct: 144 LDMLEETVMRVKHNALVMNEQIGLQTRLIDG 174
>At3g54010.2 68416.m05972 peptidyl-prolyl cis-trans isomerase,
putative / FK506-binding protein, putative / pasticcino
1-D (PAS1-D) nearly identical to pasticcino 1-D
[Arabidopsis thaliana] GI:3080740
Length = 545
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 47 FEITMSANREDTLRQFCDVTGADEDRSKFFLESSNW-QLDVA 169
FE+ A E LR+F V DED K F ++ N L+VA
Sbjct: 326 FELA-KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVA 366
>At3g54010.1 68416.m05971 peptidyl-prolyl cis-trans isomerase,
putative / FK506-binding protein, putative / pasticcino
1-D (PAS1-D) nearly identical to pasticcino 1-D
[Arabidopsis thaliana] GI:3080740
Length = 635
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 47 FEITMSANREDTLRQFCDVTGADEDRSKFFLESSNW-QLDVA 169
FE+ A E LR+F V DED K F ++ N L+VA
Sbjct: 416 FELA-KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVA 456
>At1g79650.2 68414.m09288 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota];
contains Pfam profiles PF00240: Ubiquitin family,
PF00627: UBA/TS-N domain
Length = 365
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 164 VALSSFYENGGNAYEAPANPTSAASFSVLPAA 259
V + S ++GG+A +A P SA + S PAA
Sbjct: 71 VVMLSKSKSGGSAGQASVQPVSATTSSTKPAA 102
>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 679
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 100 CYRC*RRS-Q*ILFRILKLAIRCCSFKFL*ER 192
CYRC RRS Q FR L + CSF L +R
Sbjct: 644 CYRCDRRSTQPFFFRYSDL-VSSCSFNCLWDR 674
>At4g20000.1 68417.m02928 VQ motif-containing protein contains
PF05678: VQ motif
Length = 208
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 173 SSFYENGGNAYEAPANPTSAASFSVLPAAIWNHHPSHLR 289
SS + G A+EA A S AS +P + N +PS+ R
Sbjct: 36 SSLGDGGAAAHEA-AGRRSRASRRAIPTTLLNANPSNFR 73
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 143 SSNWQLDVALSSFYENGGNAYEAPANPTSAASFSV 247
+S WQ +++ FY NG +A + N + S+
Sbjct: 452 NSGWQFNISNDKFYMNGKSAQKLQGNAKKSTVHSL 486
>At1g54310.2 68414.m06192 expressed protein
Length = 454
Score = 25.8 bits (54), Expect = 8.5
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +3
Query: 189 TVVMHMRLQLIQRVRHHSLFYQQRYGITTRLTSGAKVPEKRKNENL 326
T+VM LQL R+ HHSLFY ++R AKV K+ L
Sbjct: 17 TMVMLGVLQLPCRL-HHSLFYSSSQIASSRPQGVAKVVLKKGKTQL 61
>At1g51600.2 68414.m05811 zinc finger (GATA type) family protein
contains similarity to zinc-finger protein ZIM
[Arabidopsis thaliana] gi|8918533|dbj|BAA97679; contains
Pfam PF00320: GATA zinc finger
Length = 302
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 255 QRYGITTRLTSGAKVPEKRKNENLKYKV 338
QR+ I RL S + EKRK N K+
Sbjct: 140 QRFSIPQRLASLVRFREKRKGRNFDKKI 167
>At1g51600.1 68414.m05810 zinc finger (GATA type) family protein
contains similarity to zinc-finger protein ZIM
[Arabidopsis thaliana] gi|8918533|dbj|BAA97679; contains
Pfam PF00320: GATA zinc finger
Length = 302
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 255 QRYGITTRLTSGAKVPEKRKNENLKYKV 338
QR+ I RL S + EKRK N K+
Sbjct: 140 QRFSIPQRLASLVRFREKRKGRNFDKKI 167
>At1g02000.1 68414.m00118 NAD-dependent epimerase/dehydratase family
protein similar to nucleotide sugar epimerase from
Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
[Escherichia coli] GI:5739472, CAPI protein
{Staphylococcus aureus} SP|P39858; contains Pfam profile
PF01370 NAD dependent epimerase/dehydratase family
Length = 434
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 119 DRSKFFLESSNWQLDVALSSFY 184
D+S FFL + WQ VA +F+
Sbjct: 18 DKSPFFLHRTRWQSSVAKLAFW 39
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,332,348
Number of Sequences: 28952
Number of extensions: 132223
Number of successful extensions: 397
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -