Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0501
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.0  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   5.5  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    24   7.3  
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    24   9.7  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 61   ITTKILNFLQNETLMRLLLYLKTHKAQNHLRVAYVYFPTLRV--IICKHRVMWQSITH 228
            + + I+   +NE +     Y  T K+++ L +   Y PT R   +  K++VM Q I H
Sbjct: 1082 LISNIIRNWKNEIVTEKRGYFSTAKSKSPLALPMTYSPTERASFLSYKNKVMSQMIPH 1139


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 172 ENTHTQRASDFAPCASLNKAAIALRFRFAENSIFLSLFRWCNNNNNRPFT 23
           EN   +  +  +P AS N       +    N +FLS  R+ N N  R  T
Sbjct: 187 ENRKNRLQNVLSPIASNNVPDFNQNYPTESNPMFLSTPRFQNTNGQRTLT 236


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +1

Query: 76  LNFLQNETLMRLLLYLKTHKAQNHLRVAYVYFPTLRVIICKHRVMWQSITHYV 234
           +N+LQ  +LMR +++   +  Q    V+ +    L+  IC +    Q++ H++
Sbjct: 266 VNYLQQTSLMRCVMFTMNYDLQTFEVVSEL----LQSAICMNDSFGQTVFHHI 314


>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 388 YSSHNTLISLHSVDHS 341
           Y SHNT+ S+H   H+
Sbjct: 215 YHSHNTMASVHPCKHA 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,410,029
Number of Sequences: 5004
Number of extensions: 23703
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)