Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0501
         (394 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0663 + 19299275-19299479,19300842-19300948,19301222-193014...    31   0.33 
01_01_0507 - 3704314-3704449,3705038-3705094,3705219-3705297,370...    29   1.8  
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178           27   4.1  
12_02_0127 + 13961726-13961947,13962050-13962121,13962288-139630...    27   5.4  
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    27   7.1  
06_03_0431 + 20713186-20713977                                         26   9.4  
05_07_0339 - 29375424-29377166,29377272-29377441,29377888-293780...    26   9.4  

>09_04_0663 +
           19299275-19299479,19300842-19300948,19301222-19301413,
           19301933-19302043,19302374-19302673
          Length = 304

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -3

Query: 329 SSDSKSLQTLDQRSRY*INIICYCSNLMLSK*T*CVIDCHITLCLQIITRNVGKYTYATR 150
           SS+ + +Q     +   + I C+CS   L + T C++DC  +L    +    G Y+ +T 
Sbjct: 220 SSNMRQMQEYRHDNLQSVVITCFCSAKSLIELTCCILDCTTSLEYLTLDTTRGVYSCSTG 279

Query: 149 K 147
           K
Sbjct: 280 K 280


>01_01_0507 -
           3704314-3704449,3705038-3705094,3705219-3705297,
           3705380-3705486,3705833-3705949,3706077-3706165,
           3706668-3706721,3706800-3706866,3706971-3707128,
           3707318-3707386,3707481-3707618,3707706-3707740,
           3707829-3707952
          Length = 409

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 297 PKVSILNKYHXXXX*FNVVKVNVMCYRLPHYPMFTNY 187
           PK+S LNK H     F    + ++C R  HY  ++ Y
Sbjct: 311 PKLSTLNKEHIVTVMFVGNFIGIVCARSLHYQFYSWY 347


>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
          Length = 1143

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -3

Query: 383 KS*HLNISPFSRSLMNYLSSDSKSLQTLDQR 291
           K+  LN + FS  LMN   S+  SLQTLD R
Sbjct: 328 KTIDLNSNNFSGELMNVNFSNLPSLQTLDLR 358


>12_02_0127 +
           13961726-13961947,13962050-13962121,13962288-13963058,
           13963401-13963573,13963973-13964083,13964114-13964460,
           13964627-13964652
          Length = 573

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -1

Query: 208 LPYVYKLSHVTWENTHTQRASDFAPCASLNKAAIALRFRFAENSIFLSLFRWCNNNNNRP 29
           LP V ++ +    NT      DF             RFR  EN++  SLF W + N+ + 
Sbjct: 337 LPEVDEVENCLQTNTTNPLCLDFFEKKRSEDPLFYFRFRTDENNVVKSLF-WSDGNSRKF 395

Query: 28  FTCTG 14
           +   G
Sbjct: 396 YEMFG 400


>02_01_0521 +
           3768072-3768239,3768280-3768337,3769197-3769659,
           3769736-3769990,3770763-3770934,3772260-3772910,
           3773659-3774045,3774123-3774155,3774239-3774307,
           3774388-3774463,3775135-3775223,3775442-3775615,
           3775693-3775821
          Length = 907

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 73  ILNFLQNETLMRLLLYLKTHKAQNHLRVAYVYFPTLRVIICKHRVMWQSITHYVY 237
           + +FL  ++L     Y       NH RVA  YF      +CK+ V ++ +  + +
Sbjct: 149 LCSFLLVDSLATAESYQSCSLKVNHKRVAKAYFIGYNRSLCKYFVCYERLNRFSF 203


>06_03_0431 + 20713186-20713977
          Length = 263

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 145 DFAPCASLNKAAIALRFRFAENSIFLSLF-RWCNNNNNRPFTCTGCR 8
           + +P  +   AA+ L      NS+    F RW  +   R  TC  CR
Sbjct: 172 EMSPPGAAAAAAMLLTCAMCRNSVHGECFARWKRSRGRRAATCVVCR 218


>05_07_0339 -
           29375424-29377166,29377272-29377441,29377888-29378030,
           29378363-29378478,29378576-29378814,29378909-29379110,
           29379212-29379430,29379657-29379724,29379806-29379812,
           29380404-29380616
          Length = 1039

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 109 LLLYLKTHKAQNHLRVAYVYFPTLRVII 192
           LLLYLK     +H  V  + FP L +++
Sbjct: 604 LLLYLKLRHRHSHTHVGALVFPRLELML 631


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,198,032
Number of Sequences: 37544
Number of extensions: 124916
Number of successful extensions: 212
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)