Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0501
         (394 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)                28   2.3  
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_15257| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  

>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 220 SIATLPYVYKLSHVTWENTHTQRASDFAPCASLNKAAIALRFRF 89
           +IA +P ++  S +T+ENT        APCA    AA  L +RF
Sbjct: 409 NIAWVPTLFSYSLITFENTTLLPPQATAPCACF-LAADGLSYRF 451


>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
          Length = 450

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 106 ALRFRFAENSIFLSLFRWCNNNNNRPFTCTGCRN 5
           A +FR    +   SL  W NNNNN   + + C N
Sbjct: 11  APQFRRKVTTQMSSLVPWSNNNNNSSSSSSNCNN 44


>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 61  ITTKILN-FLQNETLMRLLLYLKTHKAQNHLR 153
           ++TKIL  F   E+LMR +  L+TH+    LR
Sbjct: 149 LSTKILEGFKLQESLMRYICILRTHRIYPRLR 180


>SB_15257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 64  TTKILNFLQNETLMRLLLYLKTHKAQNHLRVA 159
           TT ILN  Q++   RLLL +K    +N  ++A
Sbjct: 16  TTSILNLYQSKKFKRLLLDMKLSNPENVSQIA 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,441,313
Number of Sequences: 59808
Number of extensions: 178267
Number of successful extensions: 439
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)