Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0501
         (394 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containi...    27   3.4  
At5g58430.1 68418.m07317 exocyst subunit EXO70 family protein le...    27   4.5  
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03...    27   4.5  
At4g12370.1 68417.m01955 hypothetical protein                          27   6.0  
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    27   6.0  

>At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 697

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -1

Query: 76  IFLSLFRWCNNNNNRPFTC--TGCRN 5
           +F ++ R C  + +RPFTC  T C N
Sbjct: 212 LFKNMLRCCIKSTSRPFTCVITACAN 237


>At5g58430.1 68418.m07317 exocyst subunit EXO70 family protein
           leucine zipper-containing protein, Lycopersicon
           esculentum, PIR:S21495; contains Pfam domain PF03081:
           Exo70 exocyst complex subunit; similar to rexo70
           (GI:2827160) {Rattus norvegicus}
          Length = 624

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 365 ISPFSRSLMNYLSSDSKSLQTLDQ 294
           + P +R +MNYL +  +S QTL+Q
Sbjct: 398 LHPITRYVMNYLRAACRSRQTLEQ 421


>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
           PF03138: Plant protein family. The function of this
           family of plant proteins is unknown;
          Length = 698

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 229 NVLSIATLPYVYKLSHVTWENTHTQRASDFAPCASLNKAAIAL 101
           N+ S +     +K     +    + ++S + PCA  NKAA+AL
Sbjct: 224 NLASDSLAKNEFKPDTPNFREERSSKSSQWKPCADNNKAAVAL 266


>At4g12370.1 68417.m01955 hypothetical protein
          Length = 300

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/51 (21%), Positives = 21/51 (41%)
 Frame = -1

Query: 205 PYVYKLSHVTWENTHTQRASDFAPCASLNKAAIALRFRFAENSIFLSLFRW 53
           P V+KL  + WE  ++           L  + + L   +  NS++    R+
Sbjct: 205 PIVHKLEDINWEEINSTTIDGLTIFTGLYSSEVRLNLPWMRNSVYFPRLRF 255


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
            identical to ataxia-telangiectasia mutated protein (Atm)
            [Arabidopsis thaliana] GI:7529272; contains Pfam profile
            PF00855: PWWP domain; contains GA donor splice site at
            exon 73
          Length = 3255

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 79   NFLQNETLMRLLLYLKTHKAQNHLRVAYVYFPTLRVIICKHR 204
            N + +ETL+ LL +LK +   + +++  V   TLR I+   R
Sbjct: 2479 NGISDETLITLLNFLKKYLLDDSVKIIDVTSQTLRGILSTER 2520


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,010,241
Number of Sequences: 28952
Number of extensions: 113482
Number of successful extensions: 239
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)