Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0500
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    26   3.1  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    24   9.5  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    24   9.5  

>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 302 LMILPQVPLRKPCYDFYFL*MIKFGQLP 385
           L++  ++ L K  + +YF   +KFGQLP
Sbjct: 337 LVLAGELELAKKMHLYYFSIYLKFGQLP 364


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -3

Query: 365 SFRGSKSRNKVSVGEPAEGSLTCVVLCVICKYFIYLFYIYTHAYIRSFLIFI 210
           SF  S+ R   +   P  GS   +  C++  +F  LF++ + ++  SFL F+
Sbjct: 89  SFPLSQKRPFPNFLHPFTGSELSLFRCLLLFFFFLLFFL-SFSFSFSFLFFL 139


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 454 LPIE*FSEVFGPTRGGFTPVGVVGKLTKLDH 362
           LP + FS+       G  P+ +VG  TK++H
Sbjct: 517 LPPQQFSQPINSLPKGGVPILIVGNKTKVNH 547


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 124 RTARARQHTHKTIRALQNTITDTEIT 47
           + A+  QH+   + +LQN++ +T +T
Sbjct: 112 KPAQMNQHSENVVVSLQNSLANTSMT 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,075
Number of Sequences: 5004
Number of extensions: 33850
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)