Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0500
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775     29   1.7  
02_02_0176 - 7477344-7477625                                           28   4.0  
09_02_0247 + 6222463-6222628,6223121-6223134                           27   5.3  
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668...    27   9.3  

>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
          Length = 1441

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 326 GEPAEGSLTCVVLCVICKYFIYLFYIYTHAYIRSFLIFIVYPISHALARVCRDDIE 159
           GEP + S  C +L ++         I  HA   +F+I ++ P   A A    + +E
Sbjct: 93  GEPVKESFVCAILVIVLAAGFATDAIGIHALFGAFVIGVLVPKEGACAGALTEKVE 148


>02_02_0176 - 7477344-7477625
          Length = 93

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -3

Query: 392 RCWEVDQT*SFRGSKSRNKVSVGEPAEGSLTCVVLCVICKYFI---YLFYIYTHAYIRSF 222
           RC   D + S     SR + + G P++  + C  LC+  KY I   ++F+ + H  +R F
Sbjct: 26  RCSPFDCSSSIPLPWSRGRDN-GAPSKSRVKCYGLCLTPKYLIVFPFIFHRHCHPSLRGF 84


>09_02_0247 + 6222463-6222628,6223121-6223134
          Length = 59

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 428 LRTDTRWLHARRRCWE 381
           L+   RWL++ RRCW+
Sbjct: 34  LKESPRWLYSSRRCWD 49


>04_03_0961 +
           21263735-21263773,21264157-21264279,21266774-21266847,
           21266939-21267095,21267554-21267694,21267739-21267823,
           21268810-21268903,21269041-21269239,21269515-21269549,
           21270076-21270631,21270722-21270882,21271704-21271718,
           21273078-21273330,21273439-21273562,21273688-21273788,
           21274870-21274938,21275060-21275191,21275270-21275404,
           21275489-21275551,21275636-21275881,21276007-21276285
          Length = 1026

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 73  NTITDTEITVLFCVCGVL*KKKK 5
           N +T TE T  +C+CGV  K ++
Sbjct: 110 NVLTSTECTPGYCLCGVYCKNQR 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,817,759
Number of Sequences: 37544
Number of extensions: 190586
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)