Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0500
(454 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57049| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_13868| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.003
SB_45893| Best HMM Match : Arc (HMM E-Value=3.3) 33 0.11
SB_39542| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.34
SB_7447| Best HMM Match : CHGN (HMM E-Value=0) 31 0.59
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 29 2.4
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 29 2.4
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 28 3.1
SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_10165| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_39575| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_4046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_45751| Best HMM Match : HlyIII (HMM E-Value=0.0006) 27 5.5
SB_33182| Best HMM Match : rve (HMM E-Value=0.00043) 27 5.5
SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19) 27 7.3
SB_59799| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09) 27 9.6
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11) 27 9.6
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039) 27 9.6
SB_44873| Best HMM Match : Nodulin_late (HMM E-Value=3.7) 27 9.6
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17) 27 9.6
>SB_57049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2
Query: 320 VPLRKPCYDFYFL*MIKFGQLPNN 391
V LRKPCYDFYFL MIKF QL +N
Sbjct: 1 VHLRKPCYDFYFLYMIKFDQLFDN 24
>SB_13868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = +2
Query: 323 PLRKPCYDFYFL*MIKFGQLPNN 391
P PCYDFYFL MIKF QL +N
Sbjct: 8 PYENPCYDFYFLKMIKFDQLFDN 30
>SB_45893| Best HMM Match : Arc (HMM E-Value=3.3)
Length = 186
Score = 33.1 bits (72), Expect = 0.11
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1
Query: 382 KLTKLDHLEEVKVVTRFP 329
K+ + DHLEEVKVVTRFP
Sbjct: 73 KVGQTDHLEEVKVVTRFP 90
>SB_39542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 31.5 bits (68), Expect = 0.34
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +2
Query: 305 MILPQVPLRKPCYDF 349
+I PQVPLR PCYDF
Sbjct: 17 VIQPQVPLRLPCYDF 31
>SB_7447| Best HMM Match : CHGN (HMM E-Value=0)
Length = 918
Score = 30.7 bits (66), Expect = 0.59
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 217 FLSFIRFLTLSRAFVATILNLTADIIYLILLRTARARQHTHKT-IRALQNTITDTEI 50
+ +F+RF+ + F + LNL AD+ LI+ A H HK+ I+ Q + E+
Sbjct: 485 YSTFVRFM---KTFESVCLNLRADVKLLIVYFPEVAESHQHKSLIKKYQTRYPEAEL 538
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 28.7 bits (61), Expect = 2.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -3
Query: 299 CVVLCVICKYFIYLFYIYTHAY 234
C C C Y+ Y +Y Y H Y
Sbjct: 492 CYCYCYYCCYYCYCYYYYHHYY 513
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +2
Query: 173 DKRAREREKSDKR*KLRTIECMHAXXXXXXXXXXXXSHTIQHTLMILPQVPLR 331
+KR + E+ KR K IE H + + H M PQVP+R
Sbjct: 1349 EKRPKSAERYPKRTKQENIEMKHVAGVVENTNQLGQNLLLAHDPMTRPQVPVR 1401
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +3
Query: 51 ISVSVMVFCSARIVLC----VCCRARAVRSSIRYIMSAVR 158
++ +V+V CS R+ C VCC R V S R + +R
Sbjct: 365 VAYAVVVCCSCRVACCSCRVVCCSCRVVCCSCRVAHAVLR 404
>SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = -3
Query: 299 CVVL---CVICKYFIYLFYIYTHAYI--RSFLIFIVYPISHALARVCRDD 165
C+VL C++C+Y + YI YI +++ ++Y I + V +D
Sbjct: 79 CLVLTDDCLLCRYIVMSVYIVFVLYIVMSVYIVLVLYVIGVPMCHVMTND 128
>SB_10165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 269 FIYLFYIYTHAYIRSFLIFIVYPISHALAR--VCRDDIESDC*HYISNTAAYCTRTA 105
+ Y++Y +H Y R ++ Y +SH R C D + + TAA TRTA
Sbjct: 54 YSYVYYRQSHEYYR--YSYVYYRLSHEYYRTATCISDKATSINDIMCMTAATMTRTA 108
>SB_39575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 35 TEQHCYFGVSNGIL*CAYSFMRVLPCA-CSTQQY*IYNVSSQIQYRRDKRAREREKSDK 208
T++ +F V N Y V PC C+T +Y+VS +Y D R R+ + K
Sbjct: 679 TDRVLFFRVGNHAEYVVYRQKVVRPCVLCATLLPVVYSVSLDSRYEPDSNQRPRDHNYK 737
>SB_4046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = -3
Query: 320 PAEGSLTCVVLCVICKYFIYLFYIYTHAYIRSFLIFIVYPISHALARVCRDD 165
P ++TC+++ ++CK +Y+ + T YP+ HA+ + +D
Sbjct: 67 PLGHAVTCLIITMVCKTKLYVDHEGTRTLNLLIRSQTPYPLGHAVTCLAMND 118
>SB_45751| Best HMM Match : HlyIII (HMM E-Value=0.0006)
Length = 198
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 9 FFFYNTPQTQNNTVISVSVMVFCSARIVLCVCCRARAVRSSIRYIMS 149
FFFY+ P +Q + V+ S VF + ++ C A S R++ S
Sbjct: 152 FFFYSRP-SQTDFVLLSSPTVFLTVSAIMSCLCTAVCCASRHRWLRS 197
>SB_33182| Best HMM Match : rve (HMM E-Value=0.00043)
Length = 801
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 35 TEQHCYFGVSNGIL*CAYSFMRVLPCA-CSTQQY*IYNVSSQIQYRRDKRAREREKSDK 208
T++ +F V N Y V PC C+T +Y+VS +Y D R R+ + K
Sbjct: 710 TDRVLFFRVGNHAEYVVYRQNVVRPCVLCATLLPVVYSVSLDSRYEPDSNQRPRDHNYK 768
>SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
Length = 413
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 18 YNTPQTQNNTVISVSVMVFCSARIVLCVCCRARAVRSSIRYIMSAVRFNIVAT 176
YN +++ + V+V I+ CCR R VRS+ +++A + I+ T
Sbjct: 84 YNPVPAIIGSLVGIGVVVVIVTAIIYFCCCR-RPVRSAGGRVITAPQQQIITT 135
>SB_59799| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)
Length = 323
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Frame = -3
Query: 296 VVLCVICKYF----IYLFYIYTHA--YIRSFLIFIVYPI 198
+++ +ICK + I +FY Y A Y+ SF+ FIVY +
Sbjct: 226 ILIGIICKLWFDASIVVFYPYLVALTYVNSFINFIVYAL 264
>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
Length = 1496
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 205 IRFLTLSRAFVATILNLTADIIYLIL 128
+RF T SR F A+ + L+ DII+ I+
Sbjct: 712 LRFFTNSRIFTASRIILSLDIIFFIV 737
>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
Length = 685
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = -3
Query: 305 LTCVVLCVICKYFIYLFYIYTHAYIRSFLIFIVYPIS---HALARVCRDDIESD 153
+T ++ IC ++ Y +Y Y + Y + YP++ H DD+ D
Sbjct: 512 ITTTIIFTICHHYYYYYYYYYYYYYYYPRQVVRYPVNGHFHGHYDSTEDDVGRD 565
>SB_44873| Best HMM Match : Nodulin_late (HMM E-Value=3.7)
Length = 245
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -3
Query: 329 VGEPAEGSLTCVVLCVICKYFIYLFYIYTHAY----IRSFLIFIVYPIS 195
VG+P +TC+ L + F Y+++ Y Y + ++LI +++ +S
Sbjct: 85 VGQPIVMFITCLSLFLEFLQFCYIWHFYLRWYRLLEVSAYLISLIFMVS 133
>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
Length = 1440
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 112 ARQHTHKTIRALQNTITDTEITVLFC 35
A +H H T+R + +T+ D T + C
Sbjct: 810 ASRHVHSTLRHVHSTLRDVRCTSVIC 835
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,411,896
Number of Sequences: 59808
Number of extensions: 261536
Number of successful extensions: 848
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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