Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0500
         (454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17630.1 68416.m02252 cation/hydrogen exchanger, putative (CH...    30   0.84 
At3g26810.1 68416.m03354 transport inhibitor response protein, p...    27   5.9  
At4g23700.1 68417.m03411 cation/hydrogen exchanger, putative (CH...    27   7.8  
At3g10780.1 68416.m01298 emp24/gp25L/p24 family protein similar ...    27   7.8  

>At3g17630.1 68416.m02252 cation/hydrogen exchanger, putative
           (CHX19) similar to putative Na+/H+-exchanging protein
           GB:CAA23036 from [Arabidopsis thaliana]; monovalent
           cation:proton antiporter family 2 (CPA2) member,
           PMID:11500563
          Length = 857

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 326 GEPAEGSLTCVVLCVICKYFIYLFYIYTHAYIRSFLIFIVYPISHALARVCRDDIE 159
           GEP +    CV L V+         I  HA   +F++ IV P      R+  + IE
Sbjct: 315 GEPVKELYVCVTLTVVLAASFVTDTIGIHALFGAFVVGIVAPKEGPFCRILTEKIE 370


>At3g26810.1 68416.m03354 transport inhibitor response protein,
          putative E3 ubiquitin ligase SCF complex F-box subunit;
          similar to transport inhibitor response 1 GI:2352492
          from [Arabidopsis thaliana]
          Length = 575

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 10 FFFITHHKHRTTLLFRCQ*WYFVVR 84
          F F+T HK R  +   C+ WY + R
Sbjct: 13 FDFVTSHKDRNAISLVCKSWYKIER 37


>At4g23700.1 68417.m03411 cation/hydrogen exchanger, putative
           (CHX17) similar to Na+/H+-exchanging protein slr1595 -
           Synechocystis sp., EMBL:D90902; monovalent cation:proton
           antiporter family 2 (CPA2) member, PMID:11500563
          Length = 820

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = -3

Query: 326 GEPAEGSLTCVVLCVICKYFIYLFYIYTHAYIRSFLIFIVYPISHALARVCRDDIE 159
           GEP      C  L ++        +I  HA   +F+I +++P     A    + +E
Sbjct: 256 GEPVNELYVCCTLGIVLAASFVTDFIGIHALFGAFVIGVIFPKEGNFANALVEKVE 311


>At3g10780.1 68416.m01298 emp24/gp25L/p24 family protein similar to
           SP|O35587 Transmembrane protein Tmp21 precursor (21 kDa
           Transmembrane trafficking protein) {Mesocricetus
           auratus}; contains Pfam profile: PF01105 emp24/gp25L/p24
           family; contains non-consensus TG acceptor splice site
           at exon 3
          Length = 217

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 120 VRSSIRYIMSAVRFNIVATNARESVRNRINDKN*ERSN 233
           +R S  Y  SA+R NI+    RE+    IN+K   R N
Sbjct: 150 IRRSTEYA-SAIRANILYLRIREAYMREINEKTNTRVN 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,957,253
Number of Sequences: 28952
Number of extensions: 161853
Number of successful extensions: 424
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)