Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0497
         (566 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2SI92 Cluster: Site-specific DNA methylase; n=2; Prote...    35   1.5  
UniRef50_P08098 Cluster: Mobilization protein A; n=6; Enterobact...    34   2.7  
UniRef50_UPI000023DE13 Cluster: predicted protein; n=1; Gibberel...    33   3.5  
UniRef50_A3LWE0 Cluster: Predicted protein; n=1; Pichia stipitis...    33   6.2  
UniRef50_Q3WFY1 Cluster: General substrate transporter:Major fac...    32   8.1  
UniRef50_A5P1B4 Cluster: Putative uncharacterized protein; n=1; ...    32   8.1  
UniRef50_Q0UJ82 Cluster: Putative uncharacterized protein; n=1; ...    32   8.1  

>UniRef50_Q2SI92 Cluster: Site-specific DNA methylase; n=2;
           Proteobacteria|Rep: Site-specific DNA methylase -
           Hahella chejuensis (strain KCTC 2396)
          Length = 555

 Score = 34.7 bits (76), Expect = 1.5
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 524 STNAWRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLL 387
           STN +   +PVL  Q  NS  N   TP+G+TT    G+   V+  L
Sbjct: 336 STNGYALAVPVLTRQFGNSGANNVTTPAGTTTAGGGGKTQLVAAFL 381


>UniRef50_P08098 Cluster: Mobilization protein A; n=6;
           Enterobacteriaceae|Rep: Mobilization protein A -
           Escherichia coli
          Length = 529

 Score = 33.9 bits (74), Expect = 2.7
 Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 447 AVGQHNAGAVGTADRGVSFTAEPV-GRVGVRH-AGDARRPPRPRHAQNHR 304
           A G+H+AGA G    GV     P  GR G  H AG+  RP RP   Q HR
Sbjct: 309 AGGKHSAGAGG----GVRAAGGPEKGREGADHQAGERGRPERPADGQRHR 354


>UniRef50_UPI000023DE13 Cluster: predicted protein; n=1; Gibberella
           zeae PH-1|Rep: predicted protein - Gibberella zeae PH-1
          Length = 177

 Score = 33.5 bits (73), Expect = 3.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 429 AGAVGTADRGVSFTAEPVGRVGVRHAGDARRPPRPRHAQNH 307
           AG VG   +    T++PVG V + H  D    PRP   +NH
Sbjct: 112 AGLVGLRGKRGRRTSDPVGWVDLMHLVDCTTEPRPHKEKNH 152


>UniRef50_A3LWE0 Cluster: Predicted protein; n=1; Pichia
           stipitis|Rep: Predicted protein - Pichia stipitis
           (Yeast)
          Length = 816

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = -3

Query: 414 TADRGVSFTAEPVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNE 274
           TA + V   A+ V    + HA DA  PP   H  NHR+T  + IV+E
Sbjct: 105 TATKEVPLYAKTVTSERLLHAADALPPPVTIHIMNHRQTE-LDIVSE 150


>UniRef50_Q3WFY1 Cluster: General substrate transporter:Major
           facilitator superfamily; n=1; Frankia sp. EAN1pec|Rep:
           General substrate transporter:Major facilitator
           superfamily - Frankia sp. EAN1pec
          Length = 456

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 447 AVGQHNAGAVGTADRGVSFTAEPVGRVGVRHAGD 346
           A+G H+   V  A +GV+F A P+G +   H GD
Sbjct: 64  ALGGHSGTVVSFATQGVAFVARPLGSILFGHFGD 97


>UniRef50_A5P1B4 Cluster: Putative uncharacterized protein; n=1;
           Methylobacterium sp. 4-46|Rep: Putative uncharacterized
           protein - Methylobacterium sp. 4-46
          Length = 277

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = -3

Query: 408 DRGVSFTAEPVGRVGVRHAGDARRPPRPRHAQNHRETRTIPI 283
           DR  S  A P    GV   G    PPRP   Q+HR   TI +
Sbjct: 43  DRTPSPVAGPAQVAGVSPCGRPSEPPRPSSRQDHRAAMTIHV 84


>UniRef50_Q0UJ82 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 144

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 353 ACRTPTRPTGSAVNETPRSAVPTAPALCCPTASFVYSE 466
           A RTPT PT    +  P S +P  P++    A+ +YS+
Sbjct: 79  AMRTPTPPTPQLTSPPPTSKLPNQPSVLTDAAAALYSQ 116


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 480,968,092
Number of Sequences: 1657284
Number of extensions: 8287114
Number of successful extensions: 28936
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28893
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)