Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0497
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    31   0.12 
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    27   1.9  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    25   5.9  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    25   7.7  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   7.7  

>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 344 ASPACRTPTRPTGSAVNETPRSA-VPTAPALCCPTAS 451
           A+P   TP+   GS+   TP SA VP +PA   PT S
Sbjct: 279 AAPYASTPSAAVGSSRGSTPASATVPISPARGFPTTS 315


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 485 DQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRNPSD 372
           +QH +S LN   +PS S++P ++   +  + LL   +D
Sbjct: 172 NQHLDSCLNSPSSPSSSSSPYKNKDNSKSNSLLSFKTD 209


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 503 RIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRNP 378
           RI +LK  +     N+++   GST PV       +  LL  P
Sbjct: 35  RICILKGVYPREPKNKKKANKGSTAPVTFYYTKDIQYLLHEP 76


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 554 QMEWVFSFERSTNAWRSRIPVLKDQHTNSTLNRQRTPSGSTTPV 423
           Q EW+   +R +++W S+I + K  H ++  + +   S    PV
Sbjct: 145 QQEWLSLNQRYSDSWPSKITLPKWVHADALFHSRCLESPFKDPV 188


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -1

Query: 536 SFERSTNAWRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRNPSDASE 363
           S  +STN      P   DQ+T    +R    + + +  R   + +VSRL R+ S+  +
Sbjct: 57  SLSQSTNDRDIYSPREIDQYTRKVSSRTDPSTSTISNARQHPRNSVSRLSRSSSNVRQ 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,944
Number of Sequences: 5004
Number of extensions: 33427
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)