Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0497
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0549 + 18696903-18698330                                         31   0.48 
05_01_0407 + 3208818-3210218                                           29   3.4  
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380...    28   4.5  
03_01_0139 - 1099805-1099897,1100637-1100714,1100790-1100843,110...    28   6.0  
02_01_0688 + 5131555-5132334                                           28   6.0  
03_05_0200 - 21911260-21911322,21911655-21911705,21911756-219118...    27   7.9  
03_03_0165 + 14982725-14984128                                         27   7.9  
02_05_0584 - 30135768-30135790,30136104-30136866                       27   7.9  
01_01_0706 + 5442163-5442482,5443125-5443236,5444523-5444852           27   7.9  

>10_08_0549 + 18696903-18698330
          Length = 475

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = -3

Query: 426 GAVGTADRGVSFTAEPVGRVGVRHAGDARRPPRPRHAQNHRETRTIP 286
           GAV    RG +  A  V  V  R   +AR PPRP  A  HRE   +P
Sbjct: 180 GAVAEMARGGAAAAPSVAPVWGREMLEARSPPRPAFA--HREYDEVP 224


>05_01_0407 + 3208818-3210218
          Length = 466

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -3

Query: 423 AVGTADRGVSFTAEPVGRVGVRHAGDARRPPRPRH--AQNHRETRTIPIVNERKQTSTPR 250
           AVG   RGV   A  V  V  R    ARRPP PR   A  H E   +P     K + +  
Sbjct: 180 AVGEFARGVP-GAPTVKPVWARELLSARRPPLPRDVAAPRHPEYEAVPDAGRDKVSHSDA 238

Query: 249 L 247
           L
Sbjct: 239 L 239


>07_01_0511 +
           3806475-3806876,3807914-3808039,3808120-3808193,
           3808278-3808347,3808431-3808486,3808578-3808649,
           3808678-3808811,3808967-3809030,3809111-3809240,
           3809326-3809541,3809629-3809750,3810527-3810701,
           3810788-3810878,3811040-3811197,3811330-3811518,
           3813257-3813340,3813362-3813536,3815300-3815955,
           3816226-3816648,3816752-3816790
          Length = 1151

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = -3

Query: 402 GVSFTAEPVGRVGVRHAGDARRPPRPRHAQNHRETRTIPIVNERKQTST 256
           G + ++   G  G  H  D+  PP    +++HR T + P     +   T
Sbjct: 800 GAAGSSTATGAAGSNHTADSTVPPSLLSSEHHRSTESDPSAEHERHDIT 848


>03_01_0139 -
           1099805-1099897,1100637-1100714,1100790-1100843,
           1100926-1100989,1101232-1101277,1101555-1101627,
           1102199-1102270,1102349-1102441,1102539-1102591,
           1102684-1102774,1103039-1103167
          Length = 281

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 128 VLAQSQLILNYYRFEVS**AAQKRQSDLHCIDYICHLSFLSRGVDVCLRSF 280
           +L   +L L   RF V     +K+ +++  +  IC   FL R V +CL +F
Sbjct: 181 LLYGGRLFLMLQRFPVESKGRRKKLNEVGYVTTICFSGFLIRCVMMCLNAF 231


>02_01_0688 + 5131555-5132334
          Length = 259

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -3

Query: 453 KDAVGQHNAGAVGTADRGVSFTAE--PVGRVGVRHAGDARR--PPRP 325
           +DAV Q  A  V  A    S TA   P G    RH G+A R  PP P
Sbjct: 84  RDAVAQAQALRVAAASAIESVTARAPPFGPPAARHPGEAGRGNPPPP 130


>03_05_0200 -
           21911260-21911322,21911655-21911705,21911756-21911851,
           21911947-21912045,21913213-21913526,21913621-21913696,
           21913788-21915136,21915344-21915944
          Length = 882

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -1

Query: 245 EMTDDRCNLCNASRFDAFEPLTKKLQTDNSLILIGFVREQSGWHRHS 105
           +++DD C L N+ +    + +  + +T++SL  +    E S  H+ S
Sbjct: 293 DVSDDSCELANSIKAYCLDDIILQNKTNDSLSSLDITDEMSNCHKTS 339


>03_03_0165 + 14982725-14984128
          Length = 467

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 185 AAQKRQSDLHCIDYICH 235
           AA++RQS  + +DY+CH
Sbjct: 24  AARRRQSRCYLLDYVCH 40


>02_05_0584 - 30135768-30135790,30136104-30136866
          Length = 261

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 356 CRTPTRPTGSAVNETPRSAVPTAPALCC 439
           C TP        +    +AVPT PA CC
Sbjct: 172 CMTPLMSVMPCADYLTNTAVPTPPATCC 199


>01_01_0706 + 5442163-5442482,5443125-5443236,5444523-5444852
          Length = 253

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 209 SRFDAFEPLTKKLQTDNSLILIGFVREQSGWHR 111
           SR DA + LTK  Q  NS+++IG V++   W R
Sbjct: 145 SRHDAQKALTKHGQQLNSVLIIG-VKQVDPWQR 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,926,180
Number of Sequences: 37544
Number of extensions: 227828
Number of successful extensions: 745
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)