Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0497
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            27   8.1  

>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 972

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 470 STLNRQRTPSGSTTPVRSGQQTAVSRLLRNPSD 372
           S L RQ TPS  +TP +S Q +  S   +  SD
Sbjct: 282 SILRRQNTPSDDSTPPKSRQSSQSSHSSKGDSD 314


>SB_26157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1097

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +2

Query: 362  TPTRPTGSAVNETPRSAVPTA---PALCCPTAS 451
            TPT PT S        A+PTA   PAL  PT S
Sbjct: 911  TPTTPTSSGAGSPTEIALPTALPMPALDSPTDS 943


>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 350 PACRTPTRPTGSAVNETPRSAVPTAPALCCPTAS 451
           PA  TPT+PT +     P +  PT P    P A+
Sbjct: 56  PATTTPTKPTNTT---PPATTTPTKPTTTTPPAT 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,146,836
Number of Sequences: 59808
Number of extensions: 268471
Number of successful extensions: 868
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)