Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0497
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 30 1.3
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 30 1.3
AF039718-5|AAP68905.1| 760|Caenorhabditis elegans Prion-like-(q... 29 1.8
AF039718-4|AAP68906.2| 696|Caenorhabditis elegans Prion-like-(q... 29 1.8
Z70752-3|CAA94755.3| 654|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 28 4.1
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 28 4.1
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 28 4.1
Z81048-1|CAB02839.1| 587|Caenorhabditis elegans Hypothetical pr... 27 7.1
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 27 7.1
AB033380-1|BAA92264.1| 587|Caenorhabditis elegans kinesin like ... 27 7.1
Z81088-7|CAB03129.2| 337|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 140 SQLILNYYRFEVS**AAQKRQSDLHCIDYI--CHLSFLSRGVDVCLRSFTIGMVRVSLWF 313
++ LN F+ S AQK D H I I C+LS + + + T M+R SL +
Sbjct: 819 TRCFLNRLFFDASSAGAQKPSYDEHRIREITRCYLSHVLSDFNFPNQKITFNMIRPSLLY 878
Query: 314 WA 319
W+
Sbjct: 879 WS 880
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 140 SQLILNYYRFEVS**AAQKRQSDLHCIDYI--CHLSFLSRGVDVCLRSFTIGMVRVSLWF 313
++ LN F+ S AQK D H I I C+LS + + + T M+R SL +
Sbjct: 819 TRCFLNRLFFDASSAGAQKPSYDEHRIREITRCYLSHVLSDFNFPNQKITFNMIRPSLLY 878
Query: 314 WA 319
W+
Sbjct: 879 WS 880
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +2
Query: 140 SQLILNYYRFEVS**AAQKRQSDLHCIDYI--CHLSFLSRGVDVCLRSFTIGMVRVSLWF 313
++ LN F+ S AQK D H I I C+LS + + + T M+R SL +
Sbjct: 819 TRCFLNRLFFDASSAGAQKPSYDEHRIREITRCYLSHVLSDFNFPNQKITFNMIRPSLLY 878
Query: 314 WA 319
W+
Sbjct: 879 WS 880
>AF039718-5|AAP68905.1| 760|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform a protein.
Length = 760
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 518 NAWRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRNP 378
N + +R P + ++ST ++ +P TP SG T +RNP
Sbjct: 558 NGYNNR-PTVSSSSSSSTSSKYFSPDAVETPTNSGSSTPPQTSVRNP 603
>AF039718-4|AAP68906.2| 696|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
isoform b protein.
Length = 696
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 518 NAWRSRIPVLKDQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRNP 378
N + +R P + ++ST ++ +P TP SG T +RNP
Sbjct: 460 NGYNNR-PTVSSSSSSSTSSKYFSPDAVETPTNSGSSTPPQTSVRNP 505
>Z70752-3|CAA94755.3| 654|Caenorhabditis elegans Hypothetical
protein F25B3.3 protein.
Length = 654
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = +2
Query: 233 HLSFLSRGVDVCLRSFTIGMVRVSLWFWAXXXXXXXXASPACRTPTRP-TGSAVNETPRS 409
H S V C R + + R + WF + C+ +RP T SAV +P +
Sbjct: 531 HSCCKSNAVAECRRKSSSNLTRAAEWFASPRGSMRSRIINTCKRSSRPRTVSAVVTSPTT 590
Query: 410 AVPTAPALCCP 442
PT P
Sbjct: 591 EKPTCSTKLSP 601
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +2
Query: 344 ASPACRTPTRPTGSAVNETPRSAVPT----APALCCP 442
A+PA PTRPT S + PR+ PT P C P
Sbjct: 45 ATPAA-PPTRPTPSRSSAAPRATAPTPTAAPPKTCAP 80
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +2
Query: 344 ASPACRTPTRPTGSAVNETPRSAVPT----APALCCP 442
A+PA PTRPT S + PR+ PT P C P
Sbjct: 174 ATPAA-PPTRPTPSRSSAAPRATAPTPTAAPPKTCAP 209
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 485 DQHTNSTLNRQRTPSGSTTPVRSGQQTAVSRLLRNPSDAS 366
D T STL TP+ S+TP++ TA P +S
Sbjct: 53 DMETPSTLVLSSTPTSSSTPIKETTTTAPETTSTEPPSSS 92
>Z81048-1|CAB02839.1| 587|Caenorhabditis elegans Hypothetical
protein C41G7.2 protein.
Length = 587
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 353 ACRTPTRPTGSAVNETPRSAVPTAPALCCPTAS 451
ACR P+R G+ ++ T R+++P A+ + S
Sbjct: 54 ACRPPSRLPGATISATGRASLPERSAMAKTSTS 86
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 476 TNSTLNRQRTPSGSTTPVRSGQQTAVS 396
T ST+ + TPSG+T + SG TA +
Sbjct: 509 TESTVLQSSTPSGTTVTLPSGSSTATA 535
>AB033380-1|BAA92264.1| 587|Caenorhabditis elegans kinesin like
protein protein.
Length = 587
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 353 ACRTPTRPTGSAVNETPRSAVPTAPALCCPTAS 451
ACR P+R G+ ++ T R+++P A+ + S
Sbjct: 54 ACRPPSRLPGATISATGRASLPERSAMAKTSTS 86
>Z81088-7|CAB03129.2| 337|Caenorhabditis elegans Hypothetical
protein F53F1.7 protein.
Length = 337
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 156 TIIGLKFLSERLKSVKATCIA*ITSVICHFSVAVSMFVYVRLQ 284
++ G K+L R K K + + +T+++C + FV LQ
Sbjct: 225 SVAGSKYLDSREKQKKESSLDKMTAIVCSLELIYFAFVVYSLQ 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,001,503
Number of Sequences: 27780
Number of extensions: 195710
Number of successful extensions: 629
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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