Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0495
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    30   0.23 
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    30   0.23 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.2  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    26   3.8  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   5.0  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   6.6  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    25   8.8  

>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 618 AHCCKLPTANTPPQAKKANAPASSTVRASHLPLSSQSAKASAHV 487
           AH  +LP+ + PP A  + A +++T       + S  A A+ HV
Sbjct: 134 AHHAELPSGSVPPSASVSRANSTATTTPHKAGVVSNPAAANVHV 177


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 473 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGL 384
           +SRH+  L     + F  ++HGM PC  GL
Sbjct: 46  ESRHESDLIKSILLPFHNRIHGMLPCKQGL 75


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 86   SEIENGKVTAVENSDKKNE-KAPILLNLEIFRITRDSQQQHGLRHAD 223
            +E+ + +    ++ +K+N+ K  +LL  E  R TR+  ++  LRHAD
Sbjct: 1025 NELSSHRNAEKQHLEKENDYKQQLLLVTEDLRKTREDYEKELLRHAD 1071


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -2

Query: 533 RTCRFPHKVQKHLPMCTCFLQSRHKMKLFSRFSVSFLTQL 414
           R C+   ++ K +   T FL SRH +KL+  + ++ +T+L
Sbjct: 309 RACKLLDQITKIMVEETAFLLSRHLLKLWGDYDLA-MTKL 347


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 449 KVSSCVSTEESMCTWADAFALCEESGRCE 535
           +V +C S +   CTWA A  +  E   C+
Sbjct: 813 RVIACASKQLENCTWAKAQRMKREQVECD 841


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 603 LPTANTPPQAKKANAPASSTVRA-SHLPLSSQSAKASAHVHMLSS 472
           +PT+  P    +ANA  S+T    S    +S +A  S HV + S+
Sbjct: 1   MPTSGAPSNLDRANAQLSNTSSTESSSSNNSSTASGSRHVKIESN 45


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 332 PTLRPTMPRIDCCHT 376
           PTL+P+ P  D CH+
Sbjct: 176 PTLQPSFPAADFCHS 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,320
Number of Sequences: 5004
Number of extensions: 51169
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)