Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0495
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0195 - 14098865-14099083,14100209-14100352,14101820-141018... 47 1e-05
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 32 0.42
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 29 3.0
04_04_0390 - 24882572-24882577,24882928-24883009,24883089-248832... 28 5.2
07_03_0207 - 15183894-15184685,15184993-15185078,15186042-151861... 28 6.8
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727... 27 9.0
04_04_1179 - 31512592-31515126 27 9.0
04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042 27 9.0
>08_02_0195 -
14098865-14099083,14100209-14100352,14101820-14101833,
14101919-14102006,14102303-14102426,14102959-14103068,
14103142-14103348,14103441-14103568,14103781-14103892,
14105678-14105695,14105917-14106109,14106274-14106359,
14106494-14106582,14106817-14106863,14107424-14107534,
14110252-14110318,14110419-14110509
Length = 615
Score = 47.2 bits (107), Expect = 1e-05
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +2
Query: 140 EKAPILLNLEIFRITRDSQQQHGLRHADYQRYRGYCS 250
EK + ++ + + R++Q QHGLRH DY RYR YC+
Sbjct: 21 EKPLVRFSINVLELMREAQMQHGLRHGDYTRYRRYCT 57
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 31.9 bits (69), Expect = 0.42
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +2
Query: 65 INMVGQESEIENGKVTAVENSDKKNEKAPILLNLEI------FRITRDSQQQHGL-RHAD 223
+ V +SE+E+ A E ++ E+A ++I FR +Q +H R+ +
Sbjct: 63 VQEVADKSEVEDTNPAAEETNETAEEEAEEKPEIKIETAPADFRFPTTNQTRHCFTRYVE 122
Query: 224 YQRYRGYCSRP*EDCEKYSKYHR 292
Y R +C+K++KY+R
Sbjct: 123 YHRCVAAKGEDAPECDKFAKYYR 145
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -1
Query: 600 PTANTPPQAKKANAPASSTVRASHLPLSSQSAKASAHVHMLSSVET 463
PTA TPP K + P + A+H P + SA ASA + M ++ T
Sbjct: 8 PTA-TPPPYKLTSTPTPHPLAAAH-PPTPTSASASAAMQMQAATTT 51
>04_04_0390 -
24882572-24882577,24882928-24883009,24883089-24883200,
24883411-24883441
Length = 76
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 173 FRITRDSQQQHGL-RHADYQRYRGYCSRP*EDCEKYSKYHR 292
FR +Q +H R+ +Y R DCEK++KY+R
Sbjct: 28 FRFPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYR 68
>07_03_0207 -
15183894-15184685,15184993-15185078,15186042-15186144,
15186890-15186971,15187112-15187203,15187295-15187383,
15187467-15187547,15188610-15188724,15188894-15188935
Length = 493
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 612 CCKLPTANTPPQAKKANAPASSTVRASHLP-LSSQSAKASAHVHM 481
CC +P + A+ ANAP + AS LP + S +K A + M
Sbjct: 225 CCGIPQVASMVPAQPANAPLPNPSSASSLPSVISTPSKEDAELAM 269
>12_02_0811 -
23370455-23370472,23372279-23372538,23372645-23372713,
23372979-23373105,23373187-23373422,23373509-23373678,
23373855-23373935,23374013-23374084,23374273-23374344,
23374450-23374588,23375141-23375643,23376817-23377010,
23377952-23378488
Length = 825
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 582 PQAKKANAPASSTVRASHLPLSSQSAKASAHVHMLSSVETQ 460
P + A PA++TVR P SS A + ++ +L E Q
Sbjct: 285 PILRSAATPANATVRRLDFPWSSDDAATTTYLLLLYFAELQ 325
>04_04_1179 - 31512592-31515126
Length = 844
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 149 PILLNLEIFRITRDSQQQHGLRHADYQRYRG 241
P+L LEIF+++R+ + L H D RG
Sbjct: 387 PLLNGLEIFKLSRNGNLAYVLGHIDMGNQRG 417
>04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042
Length = 360
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 585 PPQAKKANAPASSTVRASHLPLSSQSAKASAHVHMLSSVETQDE 454
PPQ +K + A +P+SS + +A ++ ET+DE
Sbjct: 238 PPQQQKIQGFGGAGAGAGPVPVSSSARAMAAVAEKAAAAETEDE 281
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,840,415
Number of Sequences: 37544
Number of extensions: 355709
Number of successful extensions: 1069
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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