Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0495
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18181| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_33234| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=3.9)            29   3.0  
SB_3945| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  28   7.0  
SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_18181| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +3

Query: 411 MQLRQEANTEPRKKFHLVSRLKKACAHGQML 503
           M+L+  ANTEPRK+FHL+ RL+KA  H Q L
Sbjct: 1   MELKLLANTEPRKRFHLIRRLQKASKHAQDL 31


>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 157 PQLRNISDNKRQSAAAWSPTC*LSEISWLLFAPIRRLR-KVLKIPQGDRRHYRRRDVTTT 333
           P LRN S++K+Q+A A SPT   S  S  + +P+   R  + +        Y  R + T+
Sbjct: 78  PTLRNKSNSKQQTARAKSPT---SHRSRGVKSPVSNRRGNISRTMTSQSEPYEGRKLPTS 134

Query: 334 HLTANN 351
            LT  N
Sbjct: 135 RLTNRN 140


>SB_33234| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=3.9)
          Length = 410

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/59 (27%), Positives = 22/59 (37%)
 Frame = -1

Query: 609 CKLPTANTPPQAKKANAPASSTVRASHLPLSSQSAKASAHVHMLSSVETQDETFFSVQC 433
           C +     PP+AK  N    + ++AS        + A   VH L S    D     V C
Sbjct: 84  CGIMNMPPPPKAKAYNCHNKALLKASKAVAEESISVAGQEVHQLKSTSNSDFANSPVSC 142


>SB_3945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 405 HAMQLRQEANTEPRKKFHLVSRLKKACAHGQMLLHFVRKAAGAK 536
           +A QL +   T  +    +VSR+ K+C  G  ++H   + A  K
Sbjct: 169 NATQLAKTTTTGTKGDLKIVSRISKSCFAGADIVHLPNQIAACK 212


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 83  ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHG 208
           E ++EN +    E+ DK+ +K   L+  EI  +    QQ+ G
Sbjct: 812 EQQLENTRAKLRESYDKREDKMEDLMESEITELREKHQQELG 853


>SB_47051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 370 SYRCCKPRGHGLMPCNCVR 426
           ++ C + R HG  PC+CVR
Sbjct: 435 NFPCDRVRSHGNSPCDCVR 453


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -1

Query: 552 SSTVRASHLPLSSQSAKASAHVHMLSSVETQDETFFSVQC*LPDAVAWHE-PMPSRLAAA 376
           +ST+ AS  PL + S +  AH  ML S+   +E+  +     P ++     P+PS++   
Sbjct: 204 NSTIDASSPPLMNASFEHDAHHVMLPSLMKTEESLMNASLFTPVSLTDPSVPVPSQIIVC 263

Query: 375 V*QQSI 358
             + SI
Sbjct: 264 SAEHSI 269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,302,648
Number of Sequences: 59808
Number of extensions: 412392
Number of successful extensions: 1216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)