Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0495
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78198-7|CAB01573.1|  622|Caenorhabditis elegans Hypothetical pr...    52   2e-07
AY081844-1|AAL91661.1|  362|Caenorhabditis elegans heparan 6-O s...    31   0.50 
AC024755-9|AAF59640.2|  362|Caenorhabditis elegans Heparan sulph...    31   0.50 
Z81100-1|CAB03194.1|  331|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U42843-3|AAM75365.1|  310|Caenorhabditis elegans Skinhead protei...    28   6.1  
AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical ...    28   6.1  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    27   8.1  
U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,...    27   8.1  
AL110484-17|CAB54408.1|  586|Caenorhabditis elegans Hypothetical...    27   8.1  

>Z78198-7|CAB01573.1|  622|Caenorhabditis elegans Hypothetical
           protein F55C5.8 protein.
          Length = 622

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 22/51 (43%), Positives = 31/51 (60%)
 Frame = +2

Query: 134 KNEKAPILLNLEIFRITRDSQQQHGLRHADYQRYRGYCSRP*EDCEKYSKY 286
           + E+ P    + I ++ +D+QQQHGLRH DY RYR YC+   E   K  K+
Sbjct: 10  ETEELPPFPTVHILQVVKDAQQQHGLRHGDYARYRKYCAAKLERMRKALKF 60


>AY081844-1|AAL91661.1|  362|Caenorhabditis elegans heparan 6-O
           sulfotransferase HST-6 protein.
          Length = 362

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 518 PHKVQKHLPMCTCFLQSRHKMKLFSRFSVSFLTQLH 411
           P K Q H   C C  +S ++  LFSR+S  ++  LH
Sbjct: 106 PCKCQAHKKRCNCGRRSSNETWLFSRYSTGWVCGLH 141


>AC024755-9|AAF59640.2|  362|Caenorhabditis elegans Heparan
           sulphotransferase protein 6 protein.
          Length = 362

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 518 PHKVQKHLPMCTCFLQSRHKMKLFSRFSVSFLTQLH 411
           P K Q H   C C  +S ++  LFSR+S  ++  LH
Sbjct: 106 PCKCQAHKKRCNCGRRSSNETWLFSRYSTGWVCGLH 141


>Z81100-1|CAB03194.1|  331|Caenorhabditis elegans Hypothetical
           protein K08G2.7 protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 151 GCLLIFLIRIFYRCHLSIFNFTLLTYHINMNNQCLSYVLKTIFFII 14
           G  LIFL    + C+LSIF F L  +H+N   +  + V   I++ +
Sbjct: 28  GIPLIFL----WFCYLSIFPFFLAVFHLNKEKEKETAVYHIIYYFV 69


>Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 83  ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLR 214
           ES++EN +V   +     NEK+P++ +    +++R  + Q  +R
Sbjct: 549 ESKLENEEVGVSKPESNNNEKSPLMASSSTSKLSRKERHQRFVR 592


>Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 83  ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLR 214
           ES++EN +V   +     NEK+P++ +    +++R  + Q  +R
Sbjct: 554 ESKLENEEVGVSKPESNNNEKSPLMASSSTSKLSRKERHQRFVR 597


>Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 83  ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLR 214
           ES++EN +V   +     NEK+P++ +    +++R  + Q  +R
Sbjct: 549 ESKLENEEVGVSKPESNNNEKSPLMASSSTSKLSRKERHQRFVR 592


>Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 83  ESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLR 214
           ES++EN +V   +     NEK+P++ +    +++R  + Q  +R
Sbjct: 554 ESKLENEEVGVSKPESNNNEKSPLMASSSTSKLSRKERHQRFVR 597


>U42843-3|AAM75365.1|  310|Caenorhabditis elegans Skinhead protein
           1, isoform b protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 98  NGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLRHADYQRYRGYCS 250
           N    AV + D++ E++  +LN+ +    +    QHG  H     Y G  S
Sbjct: 22  NTAPAAVNSFDEQEEESKKILNMYLQMFNQQQVDQHGHHHQHPYAYSGVSS 72


>AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical
           protein W10C4.1 protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 259 RRLRKVLKIPQGDRRHYRRRDVTTTHLTANNAENRLLSYR 378
           RRL   L+   G R   R   + TT+   ++ ++R+LS +
Sbjct: 353 RRLTNTLRSKYGSRDEKRSHSINTTYTRCDSRDSRILSQK 392


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 600 PTANTPPQAKKANAPASSTVRASHLPLSSQSAKASAHVH 484
           P+A T P + K +  +S+    S  P S+ S+    H+H
Sbjct: 35  PSATTNPSSNKPSTVSSAAQIYSSFPSSTSSSGTGGHLH 73


>U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,
           short chain protein27 protein.
          Length = 816

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 266 CEKYSKYHRETDAITVVVMSQLPTLRPTMPRIDCCHTAAASREGM 400
           C ++++  + T  I V   S+L  LRPT     C H+A    E M
Sbjct: 35  CNRFTR--KNTPNILVTFTSRLTLLRPTFFNFACWHSAMEIFESM 77


>AL110484-17|CAB54408.1|  586|Caenorhabditis elegans Hypothetical
           protein Y38E10A.17 protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 68  NMVGQESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLRHAD 223
           N++  + E  NGKV   E   KK +   +  + ++   T D ++  GLRH +
Sbjct: 63  NILCNKCERVNGKVKRCEAHKKKRKARKVRKDGDVADDTSDREKLGGLRHVN 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,178,210
Number of Sequences: 27780
Number of extensions: 299513
Number of successful extensions: 906
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)