Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0495
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    27   0.19 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    27   0.19 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.2  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 547 HRTRFAPAAFLTKCKS-ICPCAHAFFSRDTR 458
           H T F+   +L  C S I PC +A FS+D R
Sbjct: 40  HPTVFSVLFWLGYCNSAINPCIYALFSKDFR 70


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 547 HRTRFAPAAFLTKCKS-ICPCAHAFFSRDTR 458
           H T F+   +L  C S I PC +A FS+D R
Sbjct: 488 HPTVFSVLFWLGYCNSAINPCIYALFSKDFR 518


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 71  MVGQESEIENGKVTAVENSDKKNEKAPILLNLEIF 175
           + G+ SE+ N KV  +E    +   A I  NL+++
Sbjct: 83  VAGRLSEVSNWKVLLLEAGPDEPAGAEIPSNLQLY 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,211
Number of Sequences: 438
Number of extensions: 3886
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)