Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0495
(618 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61970.1 68418.m07778 signal recognition particle-related / S... 52 4e-07
At1g77500.1 68414.m09025 expressed protein contains Pfam domains... 29 2.5
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ... 29 3.3
At4g37990.1 68417.m05368 mannitol dehydrogenase, putative (ELI3-... 28 4.3
At4g37980.1 68417.m05367 mannitol dehydrogenase, putative (ELI3-... 28 4.3
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 5.7
At3g09150.3 68416.m01078 phytochromobilin:ferredoxin oxidoreduct... 28 5.7
At3g09150.2 68416.m01077 phytochromobilin:ferredoxin oxidoreduct... 28 5.7
At3g09150.1 68416.m01076 phytochromobilin:ferredoxin oxidoreduct... 28 5.7
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa... 28 5.7
At5g49510.1 68418.m06127 VHL binding protein, putative / prefold... 27 10.0
>At5g61970.1 68418.m07778 signal recognition particle-related /
SRP-related low similarity to Signal recognition
particle 68 kDa protein (SRP68) from Homo sapiens
SP|Q9UHB9, Canis familiaris SP|Q00004
Length = 605
Score = 51.6 bits (118), Expect = 4e-07
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Frame = +2
Query: 95 ENGKVTAVENSDKKNEKAPILL---NLEIFRITRDSQQQHGLRHADYQRYRGYCS 250
+ +++A+E D K+E + +L ++ + ++ + SQ QHGLRH DY RYR YCS
Sbjct: 4 KQSEISAMEIDDPKSESSDQILPRFSINVLQLMKSSQAQHGLRHGDYARYRRYCS 58
Score = 35.9 bits (79), Expect = 0.022
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +3
Query: 387 AERAWAHAMQLRQ-EANTEPRKKFHLVSRLKKA 482
AERAW+HAM+ RQ R++ +LV RL+KA
Sbjct: 100 AERAWSHAMEKRQLPDGPNARQRIYLVGRLRKA 132
>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 879
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -1
Query: 603 LPTANTPPQAKKANAPASSTVRASHLPLSSQSAKASAHVHMLSSVETQDE 454
LP+ P K +P SST SH + + +H+H+ S E++ E
Sbjct: 77 LPSDEGKPTKHKRISP-SSTTSISHSVIEEEDTDDDSHLHLSSGSESESE 125
>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 602
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 615 HCCKLPTANTPPQAKKANAPASSTVRASHLPLSSQSAKAS 496
H LP PPQ KK N P + A + LS ++ A+
Sbjct: 39 HQAPLPPLEAPPQKKKRNQPRTPNSDAEVIALSPKTLMAT 78
>At4g37990.1 68417.m05368 mannitol dehydrogenase, putative (ELI3-2)
identical to GI:16269
Length = 359
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 104 KVTAVENSDKKNEKAPILLNLEIFRITRDSQQ 199
KVT + S+KK ++A L + F ++RD +Q
Sbjct: 205 KVTVISTSEKKRDEAINRLGADAFLVSRDPKQ 236
>At4g37980.1 68417.m05367 mannitol dehydrogenase, putative (ELI3-1)
identical to GI:16267
Length = 357
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 104 KVTAVENSDKKNEKAPILLNLEIFRITRDSQQ 199
KVT + S++K ++A L + F ++RD +Q
Sbjct: 205 KVTVISTSERKRDEAVTRLGADAFLVSRDPKQ 236
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -1
Query: 615 HCCKLPTANTPPQAKKANAPASSTVRASHLPLSSQSAKASAHVHMLSSVETQDETFFSVQ 436
HC P A ++ A ++ PL+ A+AS H +S++ D T+ +Q
Sbjct: 158 HCSTCKLIMHPICAMRSIPFAVDHPKSHSHPLTFYPAQASLVCHFCASIKKFDPTYICIQ 217
Query: 435 C 433
C
Sbjct: 218 C 218
>At3g09150.3 68416.m01078 phytochromobilin:ferredoxin
oxidoreductase, chloroplast / phytochromobilin synthase
(HY2) identical to SP|Q9SR43 Phytochromobilin:ferredoxin
oxidoreductase, chloroplast precursor (EC 1.3.7.4)
(Phytochromobilin synthase) (PFB synthase) (PPhiB
synthase) {Arabidopsis thaliana}; identical to cDNA for
phytochromobilin synthase HY2 protein, GI:13359272
Length = 250
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 313 RRDVTTTHLTAN-NAENRLLSYRCCKPRGHGLM 408
R ++ +H+ AN A+++ L++R K GHGL+
Sbjct: 151 REEMEPSHVRANCEAQHKYLTWRAQKDPGHGLL 183
>At3g09150.2 68416.m01077 phytochromobilin:ferredoxin
oxidoreductase, chloroplast / phytochromobilin synthase
(HY2) identical to SP|Q9SR43 Phytochromobilin:ferredoxin
oxidoreductase, chloroplast precursor (EC 1.3.7.4)
(Phytochromobilin synthase) (PFB synthase) (PPhiB
synthase) {Arabidopsis thaliana}; identical to cDNA for
phytochromobilin synthase HY2 protein, GI:13359272
Length = 329
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 313 RRDVTTTHLTAN-NAENRLLSYRCCKPRGHGLM 408
R ++ +H+ AN A+++ L++R K GHGL+
Sbjct: 230 REEMEPSHVRANCEAQHKYLTWRAQKDPGHGLL 262
>At3g09150.1 68416.m01076 phytochromobilin:ferredoxin
oxidoreductase, chloroplast / phytochromobilin synthase
(HY2) identical to SP|Q9SR43 Phytochromobilin:ferredoxin
oxidoreductase, chloroplast precursor (EC 1.3.7.4)
(Phytochromobilin synthase) (PFB synthase) (PPhiB
synthase) {Arabidopsis thaliana}; identical to cDNA for
phytochromobilin synthase HY2 protein, GI:13359272
Length = 327
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 313 RRDVTTTHLTAN-NAENRLLSYRCCKPRGHGLM 408
R ++ +H+ AN A+++ L++R K GHGL+
Sbjct: 228 REEMEPSHVRANCEAQHKYLTWRAQKDPGHGLL 260
>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
Length = 585
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 488 TWADAFALCEESGRCEARTVLEAGAFAFLACGGVFAVG 601
T ADA + EART + F +L+ GGVF+ G
Sbjct: 468 TLADALYKVFLASSDEARTEMREACFDYLSLGGVFSSG 505
>At5g49510.1 68418.m06127 VHL binding protein, putative / prefoldin,
putative similar to Swiss-Prot:Q15765 prefoldin subunit
3 (Von Hippel-Lindau binding protein 1; VHL binding
protein-1; VBP-1; HIBBJ46) [Mus musculus]
Length = 195
Score = 27.1 bits (57), Expect = 10.0
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 6/127 (4%)
Frame = +2
Query: 188 DSQQQHGLRHADY-QRYRGYCSRP*EDCEKYSKYHRET----DAITVVVMSQLPTLRPTM 352
D ++ G+ A + Q Y S+ D +H+E + + +++Q L+ +
Sbjct: 12 DLTERRGIPAAKFIQDVETYLSQSGLDPNSALAFHQERLQQYKVVEMKLLAQQRDLQAKI 71
Query: 353 PRIDCCHTAAASREGMGSCHATASGS*H*TEKKVS-SCVSTEESMCTWADAFALCEESGR 529
P I+ C A+ E +E S +C+ +S+C W A + E S
Sbjct: 72 PDIEKCLEVVATLEAKKGTGEALLADFEVSEGIYSRACIEDTDSVCLWLGANVMLEYS-- 129
Query: 530 CEARTVL 550
CE + L
Sbjct: 130 CEEASAL 136
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,181,981
Number of Sequences: 28952
Number of extensions: 268226
Number of successful extensions: 808
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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