Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0494
         (244 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   0.27 
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    22   1.1  
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    22   1.1  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   1.1  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   1.9  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    20   3.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    20   3.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    20   4.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    19   7.7  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.8 bits (49), Expect = 0.27
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 229 KDIRLHPGWSLSVGIWPSGWMPCS 158
           +++ L   WS++ G+W   W+ CS
Sbjct: 395 EELLLDADWSVNAGMWM--WLSCS 416


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 106 NVYIDALTHFDLSFFSMLKCRIK 38
           NV IDA+ H    F + L+C +K
Sbjct: 27  NVDIDAILHNKRLFDNYLQCLLK 49


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 106 NVYIDALTHFDLSFFSMLKCRIK 38
           NV IDA+ H    F + L+C +K
Sbjct: 27  NVDIDAILHNKRLFDNYLQCLLK 49


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 117 ESRSVMPAGSFTACEHGIQPDGQMPTDND 203
           ES SVM  G      HGIQP   +P+  +
Sbjct: 158 ESASVMTNGRI----HGIQPSPTLPSKEE 182


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 1.9
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 9   RARCTTTDYNLILHLSIEKKLKSKCVSASMYTLAKPESRSV 131
           RA+C           S+EK  K K  SA + T   P   S+
Sbjct: 121 RAKCRQQQKQHNQQQSVEKSSKLKNKSAPILTKTSPTPVSI 161


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 20.2 bits (40), Expect = 3.3
 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = -3

Query: 134 HYRSGLRL--GQRVHRCTH 84
           H ++ +RL  G+R +RC H
Sbjct: 24  HLKTHMRLHTGERPYRCEH 42


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.2 bits (40), Expect = 3.3
 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = -3

Query: 134 HYRSGLRL--GQRVHRCTH 84
           H ++ +RL  G+R +RC H
Sbjct: 177 HLKTHMRLHTGERPYRCEH 195


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 19.8 bits (39), Expect = 4.4
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +2

Query: 104 VGQAGVQIGNACWELYC 154
           +G+  V +    W LYC
Sbjct: 345 LGELAVCVNERPWSLYC 361


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 19.0 bits (37), Expect = 7.7
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 138 QALPIWTPAWPTCT 97
           ++ P+  PAW  CT
Sbjct: 184 ESQPMLWPAWVYCT 197


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,536
Number of Sequences: 336
Number of extensions: 1222
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 46
effective length of database: 107,129
effective search space used:  3642386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)