Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0494
(244 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 57 4e-10
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 55 2e-09
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 29 0.086
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 29 0.11
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 27 0.26
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 25 1.1
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 1.9
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 24 2.4
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 24 2.4
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 24 3.2
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 24 3.2
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 24 3.2
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 23 4.3
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch... 23 4.3
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 23 5.6
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 23 5.6
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 23 5.6
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 23 5.6
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 23 5.6
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 23 7.5
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi... 23 7.5
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|... 22 9.9
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 22 9.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 22 9.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 22 9.9
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 22 9.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 56.8 bits (131), Expect = 4e-10
Identities = 24/26 (92%), Positives = 24/26 (92%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRE I VHVGQAGVQIGNACWELYCL
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCL 26
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 54.8 bits (126), Expect = 2e-09
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRE I +HVGQAG QIGNACWELYCL
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCL 26
Score = 22.6 bits (46), Expect = 7.5
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 159 EHGIQPDGQM 188
EHGIQP+G M
Sbjct: 27 EHGIQPNGYM 36
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 29.1 bits (62), Expect = 0.086
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 83 RECIYVHVGQAGVQIGNACWELYCL 157
RE I + GQ G QIG+ W+ CL
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCL 27
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 28.7 bits (61), Expect = 0.11
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACW 142
MRE +++ GQ G Q+G A W
Sbjct: 1 MREIVHIQAGQCGNQVGAAFW 21
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 27.5 bits (58), Expect = 0.26
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 73 NQNA*VHLCTRWPSRSPDR*CLLGALLPVSTASSLMARCPQTMTIRGGDEY 225
N NA V T S+ P CL + P+STASS+ + C G Y
Sbjct: 279 NPNALVPSYTTLVSQLPPSPCLTVSSGPLSTASSIPSNCSCPSVKSSGPSY 329
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 1.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 81 CVSASMYTLAKPESRSVMPAGSFTACEHGIQPD 179
C A+ +T+ KP+S + G TAC PD
Sbjct: 119 CGVANRFTIIKPKSDARFSQGLCTACTFQNYPD 151
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 24.6 bits (51), Expect = 1.9
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 33 YNLILHLSIEKKLKSKCVSASMYTLAKPESRSVMPAGSF 149
YN+++ LS++ KLK +S + S++++P SF
Sbjct: 246 YNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSF 284
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 9 RARCTTTDYNLILHLSIEKKLKS 77
R +C+ TD++ IL IE LKS
Sbjct: 215 RTKCSETDFSDILPEEIEATLKS 237
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 24.2 bits (50), Expect = 2.4
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -1
Query: 166 PCSQAVKLPAGITDLDSGLANVYIDALTHFDLSFFSMLK 50
P K A I + +AN TH D+SF MLK
Sbjct: 359 PSDNVRKTLATIAKIIQSVANGTSSTKTHLDVSFQPMLK 397
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 231 ERIFVSTPDGHCLWASGH 178
ER+F+S GH A GH
Sbjct: 806 ERVFISDEHGHWSLAKGH 823
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 208 GWSLSVGIWPSGWMPCS 158
GW+ VGI+P G PCS
Sbjct: 308 GWNKLVGIFPGG--PCS 322
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 23.8 bits (49), Expect = 3.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 192 TDNDHPGW 215
TDNDHP W
Sbjct: 148 TDNDHPAW 155
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 23.4 bits (48), Expect = 4.3
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +3
Query: 66 KLKSKCVSASMYTLAKPESRSVMPAGSFTACEHGIQPDGQMPTDNDHPGW 215
K KSKC+ A++ L K E V+ S + + I D PT W
Sbjct: 291 KTKSKCIKAAIEAL-KKEKSVVIGMYSIISTTYAIS-DNTNPTIESRKMW 338
>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 522
Score = 23.4 bits (48), Expect = 4.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 193 VGIWPSGWMPCSQAVKL 143
VG+W + W+P S A+ L
Sbjct: 397 VGVWFTMWVPASSALLL 413
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 23.0 bits (47), Expect = 5.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 3 LNRARCTTTDYNLILHLSIEKKLKSKCVSAS 95
L R+RC T YN ILH + +L +K + S
Sbjct: 591 LERSRCRNTLYN-ILHPNPTYRLTAKQIMKS 620
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 23.0 bits (47), Expect = 5.6
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +3
Query: 207 PGWRRISFQHY 239
PGWR I F++Y
Sbjct: 500 PGWRSIEFKNY 510
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 23.0 bits (47), Expect = 5.6
Identities = 11/47 (23%), Positives = 20/47 (42%)
Frame = +3
Query: 3 LNRARCTTTDYNLILHLSIEKKLKSKCVSASMYTLAKPESRSVMPAG 143
L CT ++N + + ++ + S+YT E + V P G
Sbjct: 444 LAHKNCTLKEWNQLYSEIPSRLIRCEVEDRSIYTTTDAEQKLVTPEG 490
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 23.0 bits (47), Expect = 5.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 167 AVLTGSKAPSRHYRSGLRLGQRVHRCTHAF 78
AVLT R GLRLG+ C A+
Sbjct: 1060 AVLTRQPTEGRSRDGGLRLGEMERDCLIAY 1089
>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 38 FNSTFKHRKETQIKMRECIYVHVGQ 112
FN TF + T++ IY H G+
Sbjct: 71 FNDTFSPKYSTRLSSAGLIYKHFGR 95
>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 22.6 bits (46), Expect = 7.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 84 VSASMYTLAKPESRSVMPAGSFTACEHGIQPDG-QMPTDND 203
V +++ + RS++PA C G PD + PTD+D
Sbjct: 380 VHSNVRIIILSHGRSILPADVGCRC-RGDSPDTIEFPTDSD 419
>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 22.6 bits (46), Expect = 7.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -1
Query: 208 GWSLSVGIWPSGWM 167
G+S +G+WP+G M
Sbjct: 156 GFSTFLGVWPTGTM 169
>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 22.2 bits (45), Expect = 9.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 100 TRWPSRSPDR*CLLGAL 150
T+WPS PD +G L
Sbjct: 120 TQWPSEQPDNGVSVGGL 136
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 22.2 bits (45), Expect = 9.9
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = +3
Query: 168 IQPDGQMPTDNDHPGWRR-ISFQHYY 242
+Q P+DN PG RR F YY
Sbjct: 207 LQHHSPYPSDNGFPGHRRQTHFAPYY 232
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 22.2 bits (45), Expect = 9.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 100 YIDALTHFDLSFFSMLKCRIKL*SVVVQRARL 5
Y ALT+ L FF L +L VV+ A L
Sbjct: 1295 YESALTNSGLRFFESLATLGRLARVVIDEAHL 1326
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 22.2 bits (45), Expect = 9.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 100 YIDALTHFDLSFFSMLKCRIKL*SVVVQRARL 5
Y ALT+ L FF L +L VV+ A L
Sbjct: 1295 YESALTNSGLRFFESLATLGRLARVVIDEAHL 1326
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 22.2 bits (45), Expect = 9.9
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = +3
Query: 75 SKCVSASMYTLAKPESRSVMPAGSFTACEHGIQPDGQMPTDNDHPGWRRISFQH 236
S+ +S S+ S +PA ++ + + D D + P ISFQ+
Sbjct: 638 SESLSQSLNMAVDFRQSSSLPADKLSSLDIHFEDDYNSSADEEDPEASDISFQY 691
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,058,441
Number of Sequences: 5004
Number of extensions: 18502
Number of successful extensions: 54
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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