Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0494
(244 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 2e-10
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 60 2e-10
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 60 2e-10
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 4e-10
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 4e-10
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 60 4e-10
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 59 5e-10
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0) 58 8e-10
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 8e-10
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-09
SB_17881| Best HMM Match : Tubulin (HMM E-Value=0) 30 0.33
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 28 1.3
SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 28 1.3
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.3
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 27 2.3
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_37194| Best HMM Match : Pigment_DH (HMM E-Value=4.9) 26 5.4
SB_58072| Best HMM Match : Protamine_P2 (HMM E-Value=7.2) 26 5.4
SB_48476| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2) 25 7.2
SB_31422| Best HMM Match : RVT_1 (HMM E-Value=1) 25 7.2
SB_30470| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_22241| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_13538| Best HMM Match : Pigment_DH (HMM E-Value=4.9) 25 7.2
SB_7771| Best HMM Match : RVT_1 (HMM E-Value=5.3e-13) 25 7.2
SB_6517| Best HMM Match : RVT_1 (HMM E-Value=2.3) 25 7.2
SB_1419| Best HMM Match : CSE2 (HMM E-Value=6.1) 25 7.2
SB_57918| Best HMM Match : RVT_1 (HMM E-Value=1.1e-28) 25 7.2
SB_18334| Best HMM Match : CSE2 (HMM E-Value=4.9) 25 7.2
SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2
SB_3597| Best HMM Match : TAFH (HMM E-Value=3.8) 25 7.2
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_51085| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 60.9 bits (141), Expect = 2e-10
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRECI VHVGQAGVQIGNACWELYCL
Sbjct: 1 MRECISVHVGQAGVQIGNACWELYCL 26
Score = 33.1 bits (72), Expect = 0.036
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +3
Query: 159 EHGIQPDGQMPTDNDHPG 212
EHGIQPDGQMP+D G
Sbjct: 27 EHGIQPDGQMPSDKTIDG 44
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 60.5 bits (140), Expect = 2e-10
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRECI +HVGQAGVQIGNACWELYCL
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCL 26
Score = 33.9 bits (74), Expect = 0.020
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +3
Query: 159 EHGIQPDGQMPTDNDHPG 212
EHGIQPDGQMP+D G
Sbjct: 27 EHGIQPDGQMPSDKTQGG 44
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 60.5 bits (140), Expect = 2e-10
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRECI +HVGQAGVQIGNACWELYCL
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCL 26
Score = 59.3 bits (137), Expect = 5e-10
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +2
Query: 65 ETQIKMRECIYVHVGQAGVQIGNACWELYCL 157
E + RECI +HVGQAGVQIGNACWELYCL
Sbjct: 429 EKDYEERECISIHVGQAGVQIGNACWELYCL 459
Score = 32.7 bits (71), Expect = 0.047
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDGQMP+D
Sbjct: 27 EHGIQPDGQMPSD 39
Score = 32.7 bits (71), Expect = 0.047
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDGQMP+D
Sbjct: 460 EHGIQPDGQMPSD 472
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 59.7 bits (138), Expect = 4e-10
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MREC+ +HVGQAGVQIGNACWELYCL
Sbjct: 196 MRECLSIHVGQAGVQIGNACWELYCL 221
Score = 30.7 bits (66), Expect = 0.19
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDG MP+D
Sbjct: 222 EHGIQPDGHMPSD 234
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 59.7 bits (138), Expect = 4e-10
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRECI VHVGQAGVQ+GNACWELYCL
Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCL 26
Score = 32.7 bits (71), Expect = 0.047
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDGQMP+D
Sbjct: 27 EHGIQPDGQMPSD 39
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 59.7 bits (138), Expect = 4e-10
Identities = 25/28 (89%), Positives = 25/28 (89%)
Frame = +2
Query: 74 IKMRECIYVHVGQAGVQIGNACWELYCL 157
I RECI VHVGQAGVQIGNACWELYCL
Sbjct: 63 ILQRECISVHVGQAGVQIGNACWELYCL 90
Score = 58.8 bits (136), Expect = 6e-10
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
+RECI +HVGQAGVQIGNACWELYCL
Sbjct: 586 VRECISIHVGQAGVQIGNACWELYCL 611
Score = 58.4 bits (135), Expect = 8e-10
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +2
Query: 83 RECIYVHVGQAGVQIGNACWELYCL 157
RECI +HVGQAGVQIGNACWELYCL
Sbjct: 514 RECISIHVGQAGVQIGNACWELYCL 538
Score = 32.7 bits (71), Expect = 0.047
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDGQMP+D
Sbjct: 91 EHGIQPDGQMPSD 103
Score = 32.7 bits (71), Expect = 0.047
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDGQMP+D
Sbjct: 539 EHGIQPDGQMPSD 551
Score = 32.7 bits (71), Expect = 0.047
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDGQMP+D
Sbjct: 612 EHGIQPDGQMPSD 624
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 59.3 bits (137), Expect = 5e-10
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRECI +HVGQAGVQ+GNACWELYCL
Sbjct: 1 MRECISIHVGQAGVQMGNACWELYCL 26
Score = 32.7 bits (71), Expect = 0.047
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDGQMP+D
Sbjct: 27 EHGIQPDGQMPSD 39
>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 380
Score = 58.4 bits (135), Expect = 8e-10
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +2
Query: 83 RECIYVHVGQAGVQIGNACWELYCL 157
RECI +HVGQAGVQIGNACWELYCL
Sbjct: 1 RECISIHVGQAGVQIGNACWELYCL 25
Score = 32.7 bits (71), Expect = 0.047
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDGQMP+D
Sbjct: 26 EHGIQPDGQMPSD 38
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 58.4 bits (135), Expect = 8e-10
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +2
Query: 83 RECIYVHVGQAGVQIGNACWELYCL 157
RECI +HVGQAGVQIGNACWELYCL
Sbjct: 373 RECISIHVGQAGVQIGNACWELYCL 397
Score = 58.4 bits (135), Expect = 8e-10
Identities = 24/31 (77%), Positives = 26/31 (83%)
Frame = +2
Query: 65 ETQIKMRECIYVHVGQAGVQIGNACWELYCL 157
E + RECI VHVGQAGVQ+GNACWELYCL
Sbjct: 800 EKDYEERECISVHVGQAGVQMGNACWELYCL 830
Score = 32.7 bits (71), Expect = 0.047
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDGQMP+D
Sbjct: 398 EHGIQPDGQMPSD 410
Score = 32.7 bits (71), Expect = 0.047
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDGQMP+D
Sbjct: 831 EHGIQPDGQMPSD 843
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 57.6 bits (133), Expect = 1e-09
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = +2
Query: 65 ETQIKMRECIYVHVGQAGVQIGNACWELYCL 157
E + REC+ +HVGQAGVQ+GNACWELYCL
Sbjct: 414 EKDYEERECVSIHVGQAGVQMGNACWELYCL 444
Score = 32.7 bits (71), Expect = 0.047
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDGQMP+D
Sbjct: 12 EHGIQPDGQMPSD 24
Score = 32.7 bits (71), Expect = 0.047
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDGQMP+D
Sbjct: 445 EHGIQPDGQMPSD 457
Score = 30.7 bits (66), Expect = 0.19
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2
Query: 125 IGNACWELYCL 157
+GNACWELYCL
Sbjct: 1 MGNACWELYCL 11
>SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 458
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 77 KMRECIYVHVGQAGVQIGNACWEL 148
KMRE ++ GQ G QIG WE+
Sbjct: 213 KMREIVHCQAGQCGNQIGAKFWEV 236
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWEL 148
MRE ++ GQ G QIG WE+
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEV 23
>SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWEL 148
MRE ++ GQ G QIG WE+
Sbjct: 1 MREIVHCQAGQCGNQIGAKFWEV 23
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 72 KSKCVSASMYTLAKPESRSVMPAGSFTACEHGIQPDGQMPTDND 203
K+K + + +L K S S G G++P GQ PTDND
Sbjct: 454 KNKLLLEELNSLKKKNSVSSKDVGM----RKGVRPRGQAPTDND 493
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 78 KCVSASMYTLAKPESRSVMPAGSFT-ACEHGIQPDGQMPTDND 203
+C S S +T A GS+T AC+ G DGQ+ TD D
Sbjct: 512 ECTSGS-HTCAPSGGVCTNTMGSYTCACDSGYTGDGQICTDID 553
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWEL 148
MRE + + GQ G QIG WE+
Sbjct: 1 MREIVSLQAGQCGNQIGAKFWEV 23
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 243 SNSVERIFVSTPDGHCLWASGHQAGC-RAH 157
SN++ R+ S PDG +GH GC R H
Sbjct: 920 SNAIGRLCDSCPDGSYGLRAGHPDGCLRCH 949
>SB_37194| Best HMM Match : Pigment_DH (HMM E-Value=4.9)
Length = 371
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 200 IVCGHLAIRLDAVLTGSKAPSRHYRSGLRLGQRVHRCT 87
I+C L + T + PSRHY+S R H C+
Sbjct: 231 IICSMLGLNKQTTDTMGQQPSRHYQS---FSGREHDCS 265
>SB_58072| Best HMM Match : Protamine_P2 (HMM E-Value=7.2)
Length = 187
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 139 LGALLPVSTASSLMARCPQTMTIRGGDEY 225
L ALLP S+L + P T+RG + +
Sbjct: 22 LQALLPSEAQSALPSETPSAFTLRGSNRF 50
>SB_48476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1
Query: 205 WSLSVGIWPSGW 170
WSL +WPS W
Sbjct: 161 WSLESSVWPSSW 172
>SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)
Length = 671
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 204 GHCLWASGHQAGCRAHRQ*SSQQALPIW 121
G+ W SG C+ +R SS+ P W
Sbjct: 204 GNTTWRSGKSDNCQNNRPTSSRSYFPKW 231
>SB_31422| Best HMM Match : RVT_1 (HMM E-Value=1)
Length = 374
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1
Query: 205 WSLSVGIWPSGW 170
WSL +WPS W
Sbjct: 164 WSLESSVWPSSW 175
>SB_30470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 912
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -3
Query: 242 VIVLKG-YSSPPRMVIVCGH 186
V+ L G Y+SPP M++ GH
Sbjct: 566 VMALNGNYTSPPTMIVTSGH 585
>SB_22241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 74 IKMRECIYVHVGQAGVQIGNAC 139
+ + +C+ VHVGQ V G C
Sbjct: 354 VHVGQCVIVHVGQCEVAHGGQC 375
>SB_13538| Best HMM Match : Pigment_DH (HMM E-Value=4.9)
Length = 223
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 200 IVCGHLAIRLDAVLTGSKAPSRHYRSGLRLGQRVHRCT 87
I+C L + T + PSRHY+S R H C+
Sbjct: 83 IICSMLGLNKQTTDTMGQQPSRHYQS---FSGRDHDCS 117
>SB_7771| Best HMM Match : RVT_1 (HMM E-Value=5.3e-13)
Length = 384
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1
Query: 205 WSLSVGIWPSGW 170
WSL +WPS W
Sbjct: 19 WSLESSVWPSSW 30
>SB_6517| Best HMM Match : RVT_1 (HMM E-Value=2.3)
Length = 275
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1
Query: 205 WSLSVGIWPSGW 170
WSL +WPS W
Sbjct: 65 WSLESSVWPSSW 76
>SB_1419| Best HMM Match : CSE2 (HMM E-Value=6.1)
Length = 270
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1
Query: 205 WSLSVGIWPSGW 170
WSL +WPS W
Sbjct: 152 WSLESSVWPSSW 163
>SB_57918| Best HMM Match : RVT_1 (HMM E-Value=1.1e-28)
Length = 395
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1
Query: 205 WSLSVGIWPSGW 170
WSL +WPS W
Sbjct: 33 WSLESSVWPSSW 44
>SB_18334| Best HMM Match : CSE2 (HMM E-Value=4.9)
Length = 296
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1
Query: 205 WSLSVGIWPSGW 170
WSL +WPS W
Sbjct: 178 WSLESSVWPSSW 189
>SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1
Query: 205 WSLSVGIWPSGW 170
WSL +WPS W
Sbjct: 212 WSLESSVWPSSW 223
>SB_3597| Best HMM Match : TAFH (HMM E-Value=3.8)
Length = 283
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +3
Query: 54 SIEKKLKSKCVSASMYTLAKPESRSVMPAGSFTACEHGIQPDGQMPTDNDHPGWRRISFQ 233
S E+ ++C + Y L + + + + + D +P++N+H RRISF
Sbjct: 131 STEESFNNRCNELTNYLLKRGYKPAFLKRQILRVADIS-RIDALLPSNNNHKNSRRISFV 189
Query: 234 HYY 242
Y
Sbjct: 190 TTY 192
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 36 NLILHLSIEKKLKSKCVSASMYTLAKPESRSVMPAGSFTACEHGIQPDGQMPTDN 200
N++ S EK L + S +L KP SRS + S T+ + P GQ+ N
Sbjct: 438 NVVSSSSSEKLLSTDSDSEVKESLPKPRSRSHRHSSSSTSSQ---LPHGQLSLSN 489
>SB_51085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1251
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -1
Query: 229 KDIRLHPGWSLSVGIWPSGWMPCSQAVKLPAGITD--LDSGLANVYIDALTHFDLSFFSM 56
KDI+LHP SV W + W L + + + G+ Y + + ++ F
Sbjct: 880 KDIQLHPNNQQSVLAWITEWSSEKNNPVLYYKLQEQLAEEGVGKRYKTEPSEYSINDFFA 939
Query: 55 LKC 47
+KC
Sbjct: 940 MKC 942
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,439,128
Number of Sequences: 59808
Number of extensions: 154496
Number of successful extensions: 427
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 16,821,457
effective HSP length: 58
effective length of database: 13,352,593
effective search space used: 293757046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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