Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0494
(244 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 56 3e-09
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 56 3e-09
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 56 3e-09
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 56 3e-09
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 56 3e-09
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 56 3e-09
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 56 3e-09
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 56 3e-09
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 56 3e-09
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 56 3e-09
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 56 4e-09
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 55 6e-09
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 54 1e-08
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 54 2e-08
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 53 3e-08
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 31 0.11
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 31 0.11
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 31 0.14
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 31 0.14
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 30 0.25
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 29 0.33
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 29 0.58
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 29 0.58
Z99942-3|CAB17071.2| 585|Caenorhabditis elegans Hypothetical pr... 28 0.77
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 27 1.3
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 27 1.3
Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical pr... 26 4.1
U28928-1|AAA68334.3| 589|Caenorhabditis elegans Anchor cell fus... 25 7.1
EF205023-1|ABP04049.1| 589|Caenorhabditis elegans anchor cell f... 25 7.1
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho... 25 7.1
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho... 25 7.1
Z68132-2|CAA92220.2| 762|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 25 9.4
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 25 9.4
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 56.4 bits (130), Expect = 3e-09
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRE I +HVGQAGVQIGNACWELYCL
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCL 26
Score = 31.9 bits (69), Expect = 0.062
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 159 EHGIQPDGQMPTDNDHPG 212
EHGIQPDG MPT + + G
Sbjct: 27 EHGIQPDGTMPTQSTNEG 44
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 56.4 bits (130), Expect = 3e-09
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRE I +HVGQAGVQIGNACWELYCL
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCL 26
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 56.4 bits (130), Expect = 3e-09
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRE I +HVGQAGVQIGNACWELYCL
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCL 26
Score = 31.5 bits (68), Expect = 0.082
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 159 EHGIQPDGQMPTDNDHPG 212
EHGIQPDG MP+D G
Sbjct: 27 EHGIQPDGTMPSDQQADG 44
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 56.4 bits (130), Expect = 3e-09
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRE I +HVGQAGVQIGNACWELYCL
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCL 26
Score = 31.1 bits (67), Expect = 0.11
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 159 EHGIQPDGQMPTDNDHPG 212
EHGIQPDG MP++ + G
Sbjct: 27 EHGIQPDGTMPSEQQNEG 44
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 56.4 bits (130), Expect = 3e-09
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRE I +HVGQAGVQIGNACWELYCL
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCL 26
Score = 31.5 bits (68), Expect = 0.082
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 159 EHGIQPDGQMPTDNDHPG 212
EHGIQPDG MP+D G
Sbjct: 27 EHGIQPDGTMPSDQQADG 44
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 56.4 bits (130), Expect = 3e-09
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRE I +HVGQAGVQIGNACWELYCL
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCL 26
Score = 31.9 bits (69), Expect = 0.062
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 159 EHGIQPDGQMPTDNDHPG 212
EHGIQPDG MPT + + G
Sbjct: 27 EHGIQPDGTMPTQSTNEG 44
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 56.4 bits (130), Expect = 3e-09
Identities = 23/26 (88%), Positives = 24/26 (92%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRE I +HVGQAGVQIGNACWELYCL
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCL 26
Score = 31.1 bits (67), Expect = 0.11
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 159 EHGIQPDGQMPTDNDHPG 212
EHGIQPDG MP++ + G
Sbjct: 27 EHGIQPDGTMPSEQQNEG 44
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 56.0 bits (129), Expect = 3e-09
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRE I +H+GQAGVQIGNACWELYCL
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCL 26
Score = 33.1 bits (72), Expect = 0.027
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +3
Query: 159 EHGIQPDGQMPTDNDHPG 212
EHGIQPDGQMP+D G
Sbjct: 27 EHGIQPDGQMPSDKSLGG 44
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 56.0 bits (129), Expect = 3e-09
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRE I +H+GQAGVQIGNACWELYCL
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCL 26
Score = 33.1 bits (72), Expect = 0.027
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +3
Query: 159 EHGIQPDGQMPTDNDHPG 212
EHGIQPDGQMP+D G
Sbjct: 27 EHGIQPDGQMPSDKSLGG 44
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 56.0 bits (129), Expect = 3e-09
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRE I +H+GQAGVQIGNACWELYCL
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCL 26
Score = 33.1 bits (72), Expect = 0.027
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +3
Query: 159 EHGIQPDGQMPTDNDHPG 212
EHGIQPDGQMP+D G
Sbjct: 27 EHGIQPDGQMPSDKSLGG 44
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 55.6 bits (128), Expect = 4e-09
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRE + +H+GQAGVQIGNACWELYCL
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCL 26
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 159 EHGIQPDGQMPTDNDH 206
EHGI PDG MP D +
Sbjct: 27 EHGITPDGLMPDDTSY 42
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 55.2 bits (127), Expect = 6e-09
Identities = 19/25 (76%), Positives = 23/25 (92%)
Frame = +2
Query: 83 RECIYVHVGQAGVQIGNACWELYCL 157
REC+ +H+GQAG QIGNACWELYC+
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCI 30
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 54.0 bits (124), Expect = 1e-08
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +2
Query: 83 RECIYVHVGQAGVQIGNACWELYCL 157
RE I +H+GQAGVQIGNACWELYCL
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCL 25
Score = 33.1 bits (72), Expect = 0.027
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +3
Query: 159 EHGIQPDGQMPTDNDHPG 212
EHGIQPDGQMP+D G
Sbjct: 26 EHGIQPDGQMPSDKSLGG 43
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 53.6 bits (123), Expect = 2e-08
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +2
Query: 77 KMRECIYVHVGQAGVQIGNACWELYCL 157
+ RE I +HVGQAGVQ+GNACWELYCL
Sbjct: 5 RSREVISIHVGQAGVQMGNACWELYCL 31
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 159 EHGIQPDGQMPTDNDHPGWRRISFQHYY 242
EHGIQPDG M + D G SF ++
Sbjct: 32 EHGIQPDG-MINEEDSLGVDDDSFNTFF 58
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 52.8 bits (121), Expect = 3e-08
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +2
Query: 83 RECIYVHVGQAGVQIGNACWELYCL 157
RE I +HVGQAGVQIGNACWEL+CL
Sbjct: 8 REVISIHVGQAGVQIGNACWELFCL 32
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWEL 148
MRE ++V GQ G QIG+ WE+
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEV 23
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 159 EHGIQPDGQMPTDND 203
EHGIQPDG ++D
Sbjct: 27 EHGIQPDGTFKGESD 41
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWEL 148
MRE ++V GQ G QIG+ WE+
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEV 23
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 159 EHGIQPDGQMPTDND 203
EHGIQPDG + D
Sbjct: 27 EHGIQPDGTFKGETD 41
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 30.7 bits (66), Expect = 0.14
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWEL 148
MRE +++ GQ G QIG+ WE+
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEV 23
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 30.7 bits (66), Expect = 0.14
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWEL 148
MRE +++ GQ G QIG+ WE+
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEV 23
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 29.9 bits (64), Expect = 0.25
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWEL 148
MRE ++V GQ G QIG WE+
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEV 23
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 159 EHGIQPDGQMPTDND 203
EHGIQPDG ++D
Sbjct: 27 EHGIQPDGTYKGESD 41
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 29.5 bits (63), Expect = 0.33
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWEL 148
MRE +++ GQ G QIG WE+
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEV 23
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 28.7 bits (61), Expect = 0.58
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWE 145
M+E I V VGQ G QIG WE
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWE 22
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 28.7 bits (61), Expect = 0.58
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWE 145
M+E I V VGQ G QIG WE
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWE 22
>Z99942-3|CAB17071.2| 585|Caenorhabditis elegans Hypothetical
protein H13N06.6 protein.
Length = 585
Score = 28.3 bits (60), Expect = 0.77
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -3
Query: 182 AIRLDAVLTGSKAPSRHYRSGLRLGQRVHRCTH 84
A +L A LTG K + YRSG+R+G V+R H
Sbjct: 382 ASQLHAHLTGRKLFTSQYRSGVRIGD-VNRDEH 413
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 167 AVLTGSKAPSRHYRSGLRL-GQRVHRCTHAF*FEFLFY 57
AVL A Y + L L GQRVH C F +FL Y
Sbjct: 201 AVLAVPTAVRMDYETNLSLSGQRVHWCRRRFPAQFLGY 238
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 167 AVLTGSKAPSRHYRSGLRL-GQRVHRCTHAF*FEFLFY 57
AVL A Y + L L GQRVH C F +FL Y
Sbjct: 201 AVLAVPTAVRMDYETNLSLSGQRVHWCRRRFPAQFLGY 238
>Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical
protein T21C9.3b protein.
Length = 565
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = +3
Query: 81 CVSASMYTLAKPESRSVMPAGSFTACEHGIQPDGQMPTD---NDHPGWRRISFQ 233
C S+ LAK E + P +T C +Q T+ P R+I F+
Sbjct: 354 CTPLSLSYLAKKEDMEIFPLCDYTQCTVDVQKGNYSDTECANKCFPDCRQIRFE 407
>Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical
protein T21C9.3a protein.
Length = 501
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = +3
Query: 81 CVSASMYTLAKPESRSVMPAGSFTACEHGIQPDGQMPTD---NDHPGWRRISFQ 233
C S+ LAK E + P +T C +Q T+ P R+I F+
Sbjct: 354 CTPLSLSYLAKKEDMEIFPLCDYTQCTVDVQKGNYSDTECANKCFPDCRQIRFE 407
>U28928-1|AAA68334.3| 589|Caenorhabditis elegans Anchor cell fusion
failure protein1 protein.
Length = 589
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -1
Query: 184 WPSGWMPCSQAV--KLPAGITDLDSGLAN 104
W G PCSQA L +G++DL + N
Sbjct: 495 WSKGHSPCSQAECNSLKSGVSDLFPWIMN 523
>EF205023-1|ABP04049.1| 589|Caenorhabditis elegans anchor cell
fusion failure-1 protein.
Length = 589
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -1
Query: 184 WPSGWMPCSQAV--KLPAGITDLDSGLAN 104
W G PCSQA L +G++DL + N
Sbjct: 495 WSKGHSPCSQAECNSLKSGVSDLFPWIMN 523
>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform c protein.
Length = 1027
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 181 PSGWMPCSQAVKLPAGITDLDSGLANVYIDALTHFDLS 68
PS C Q ++LP GI DS I +L+ +S
Sbjct: 455 PSDEELCEQYIELPIGIQKFDSATQKTAIKSLSRHLIS 492
>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform a protein.
Length = 1241
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 181 PSGWMPCSQAVKLPAGITDLDSGLANVYIDALTHFDLS 68
PS C Q ++LP GI DS I +L+ +S
Sbjct: 612 PSDEELCEQYIELPIGIQKFDSATQKTAIKSLSRHLIS 649
>Z68132-2|CAA92220.2| 762|Caenorhabditis elegans Hypothetical
protein F09C8.2 protein.
Length = 762
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 114 PESRSVMPAGSFTACEHGIQPDGQMPTDND 203
P SR A FTA ++P+ Q PT +D
Sbjct: 305 PASRPAY-AQKFTAAAQNLKPEQQQPTTSD 333
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 98 VHVGQAGVQIGNACWE 145
VHVGQ G Q+ A W+
Sbjct: 10 VHVGQCGNQLAQAFWK 25
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 98 VHVGQAGVQIGNACWE 145
VHVGQ G Q+ A W+
Sbjct: 10 VHVGQCGNQLAQAFWK 25
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,043,531
Number of Sequences: 27780
Number of extensions: 111673
Number of successful extensions: 287
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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