Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0494
         (244 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   0.41 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   0.71 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    20   3.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   6.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   6.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    19   6.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 0.41
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 226 DIRLHPGWSLSVGIWPSGWMPCS 158
           ++ L   WS++ G+W   W+ CS
Sbjct: 400 ELLLDADWSVNAGMWM--WLSCS 420


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 0.71
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 143 PSRHYRSGLR 114
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 137 RHYRSGLRLGQRVHRCT 87
           RH R  +  G+R H+CT
Sbjct: 165 RHMR--IHTGERPHKCT 179


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 90  HSRILI*VSFLCLNV 46
           +SRI+  V F+C N+
Sbjct: 407 YSRIVFPVCFVCFNL 421


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 90  HSRILI*VSFLCLNV 46
           +SRI+  V F+C N+
Sbjct: 407 YSRIVFPVCFVCFNL 421


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 90  HSRILI*VSFLCLNV 46
           +SRI+  V F+C N+
Sbjct: 345 YSRIVFPVCFVCFNL 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,667
Number of Sequences: 438
Number of extensions: 1421
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)