Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0494
(244 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 59 4e-10
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 59 4e-10
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 59 4e-10
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 59 4e-10
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 54 1e-08
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 54 1e-08
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 54 1e-08
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 33 0.035
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 32 0.046
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 32 0.046
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 31 0.11
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 31 0.11
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 31 0.11
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 31 0.11
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 31 0.11
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 29 0.43
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 29 0.43
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 29 0.43
At4g27630.1 68417.m03971 expressed protein 27 1.3
At2g26620.1 68415.m03194 glycoside hydrolase family 28 protein /... 27 1.7
At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote... 26 3.0
At1g23090.1 68414.m02887 sulfate transporter, putative similar t... 26 3.0
At5g01230.1 68418.m00029 FtsJ-like methyltransferase family prot... 26 4.0
At3g24320.1 68416.m03054 DNA mismatch repair MutS family (MSH1) ... 26 4.0
At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00... 25 5.3
At5g04930.1 68418.m00521 phospholipid-transporting ATPase 1 / am... 25 5.3
At1g06870.1 68414.m00731 signal peptidase, putative similar to c... 25 5.3
At5g22780.1 68418.m02663 adaptin family protein similar to SP|P1... 25 7.0
At5g22770.3 68418.m02661 adaptin family protein similar to SP|P1... 25 7.0
At5g22770.2 68418.m02660 adaptin family protein similar to SP|P1... 25 7.0
At5g22770.1 68418.m02659 adaptin family protein similar to SP|P1... 25 7.0
At5g07140.1 68418.m00814 protein kinase family protein contains ... 25 9.3
At4g27630.2 68417.m03972 expressed protein 25 9.3
At3g26860.1 68416.m03361 self-incompatibility protein-related si... 25 9.3
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 25 9.3
At1g01610.1 68414.m00078 phospholipid/glycerol acyltransferase f... 25 9.3
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 59.3 bits (137), Expect = 4e-10
Identities = 21/26 (80%), Positives = 25/26 (96%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRECI +H+GQAG+Q+GNACWELYCL
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCL 26
Score = 31.5 bits (68), Expect = 0.081
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDGQMP D
Sbjct: 27 EHGIQPDGQMPGD 39
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 59.3 bits (137), Expect = 4e-10
Identities = 21/26 (80%), Positives = 25/26 (96%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRECI +H+GQAG+Q+GNACWELYCL
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCL 26
Score = 31.5 bits (68), Expect = 0.081
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDGQMP D
Sbjct: 27 EHGIQPDGQMPGD 39
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 59.3 bits (137), Expect = 4e-10
Identities = 21/26 (80%), Positives = 25/26 (96%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRECI +H+GQAG+Q+GNACWELYCL
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCL 26
Score = 32.7 bits (71), Expect = 0.035
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDGQMP+D
Sbjct: 27 EHGIQPDGQMPSD 39
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 59.3 bits (137), Expect = 4e-10
Identities = 21/26 (80%), Positives = 25/26 (96%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRECI +H+GQAG+Q+GNACWELYCL
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCL 26
Score = 32.7 bits (71), Expect = 0.035
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDGQMP+D
Sbjct: 27 EHGIQPDGQMPSD 39
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 54.0 bits (124), Expect = 1e-08
Identities = 19/26 (73%), Positives = 24/26 (92%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRE I +H+GQAG+Q+GN+CWELYCL
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCL 26
Score = 30.7 bits (66), Expect = 0.14
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDG MP+D
Sbjct: 27 EHGIQPDGMMPSD 39
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 54.0 bits (124), Expect = 1e-08
Identities = 19/26 (73%), Positives = 24/26 (92%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRE I +H+GQAG+Q+GN+CWELYCL
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCL 26
Score = 30.7 bits (66), Expect = 0.14
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +3
Query: 159 EHGIQPDGQMPTD 197
EHGIQPDG MP+D
Sbjct: 27 EHGIQPDGMMPSD 39
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 54.0 bits (124), Expect = 1e-08
Identities = 19/26 (73%), Positives = 24/26 (92%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYCL 157
MRE I +H+GQAG+Q+GN+CWELYCL
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCL 26
Score = 30.7 bits (66), Expect = 0.14
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 159 EHGIQPDGQMPTDN 200
EHGIQPDG MP+D+
Sbjct: 27 EHGIQPDGTMPSDS 40
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 32.7 bits (71), Expect = 0.035
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYC 154
MRE ++V GQ G QIG+ WE+ C
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVIC 25
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 32.3 bits (70), Expect = 0.046
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYC 154
MRE +++ GQ G QIG+ WE+ C
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVC 25
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 32.3 bits (70), Expect = 0.046
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYC 154
MRE +++ GQ G QIG+ WE+ C
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVIC 25
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYC 154
MRE +++ GQ G QIG WE+ C
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVC 25
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYC 154
MRE +++ GQ G QIG WE+ C
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVC 25
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYC 154
MRE +++ GQ G QIG WE+ C
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVIC 25
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYC 154
MRE +++ GQ G QIG WE+ C
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVC 25
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWELYC 154
MRE +++ GQ G QIG WE+ C
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVIC 25
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 29.1 bits (62), Expect = 0.43
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 83 RECIYVHVGQAGVQIGNACWELYCL 157
RE I + VGQ G QIG W+ CL
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCL 27
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 29.1 bits (62), Expect = 0.43
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 83 RECIYVHVGQAGVQIGNACWELYCL 157
RE I + VGQ G QIG W+ CL
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCL 27
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 29.1 bits (62), Expect = 0.43
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 80 MRECIYVHVGQAGVQIGNACWEL 148
MRE +++ GQ G QIG+ WE+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEV 23
>At4g27630.1 68417.m03971 expressed protein
Length = 348
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 236 VLKGYSSPPRMVIVCGHLAIRLDAVLTGSKAPSRHY 129
+LKG+ S P++V G + + L AVL+G A + Y
Sbjct: 19 ILKGFFSMPQLVSRIGVIGVTLMAVLSGFGAVNLPY 54
>At2g26620.1 68415.m03194 glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein similar to
SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
(Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
mays}; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 402
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 69 LKSKCVSASMYTLAKPESRSVMPAGSFTACEHGIQPDGQMPTDN 200
LK+ C+S + +A SRS + F HG +PDG+ TDN
Sbjct: 8 LKALCLSLLLIVVA---SRSTIRPKVFNVQRHGSKPDGK--TDN 46
>At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein
kinase, putative
Length = 658
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 132 MPAGSFTACEHGIQPDGQMPTDNDH 206
MP GS +A HG + G+ P D D+
Sbjct: 426 MPTGSLSALLHGSRGSGRTPLDWDN 450
>At1g23090.1 68414.m02887 sulfate transporter, putative similar to
sulfate transporter [Arabidopsis thaliana] GI:2285885;
contains Pfam profiles PF00916: Sulfate transporter
family, PF01740: STAS domain
Length = 631
Score = 26.2 bits (55), Expect = 3.0
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +3
Query: 48 HLSIEKKLKSKCVSASMYTLAKPESRSVMPAGSFTACEHGIQPDGQMPTDNDHPGWRRIS 227
HLS+ KK K VSA L+ S ++ F A HGI G++P + P W +
Sbjct: 247 HLSM-KKPKLFWVSAGAPLLSVIVSTLLVFV--FRAERHGISVIGKLPEGLNPPSWNMLQ 303
Query: 228 F 230
F
Sbjct: 304 F 304
>At5g01230.1 68418.m00029 FtsJ-like methyltransferase family protein
contains Pfam profile: PF01728 FtsJ-like
methyltransferase
Length = 309
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 102 TLAKPESRSVMPAGSFTACEHGIQPDGQMPTD 197
T AKP+S +F CE+ P+G P D
Sbjct: 188 TFAKPKSSRNSSIEAFAVCENYSPPEGFNPRD 219
>At3g24320.1 68416.m03054 DNA mismatch repair MutS family (MSH1) low
similarity to SP|Q56239 DNA mismatch repair protein mutS
{Thermus aquaticus}; contains Pfam profiles PF05190:
MutS family domain IV, PF01624: MutS domain I, PF01541:
Endo/excinuclease amino terminal domain
Length = 1118
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 217 LHPGWSLSVGIWPSGWMPCSQAVKLPAGITDLDSGLANVYI 95
LH G + +G P+ +PC V LP+ SGL ++Y+
Sbjct: 368 LHLGTATQIGALPTEGIPCLLKVLLPSTC----SGLPSLYV 404
>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 571
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 200 IVCGHLAIRLDAVLTGSKAPSR-HYRSGLRLGQR 102
IV H+++R+D LTG+ P+R Y + L +R
Sbjct: 218 IVTKHVSLRVDEPLTGNLFPTRSKYDEAMMLERR 251
>At5g04930.1 68418.m00521 phospholipid-transporting ATPase 1 /
aminophospholipid flippase 1 / magnesium-ATPase 1 (ALA1)
nearly identical to SP|P98204 Phospholipid-transporting
ATPase 1 (EC 3.6.3.1) (Aminophospholipid flippase 1)
{Arabidopsis thaliana}; contains InterPro accession
IPR005834: Haloacid dehalogenase-like hydrolase
Length = 1158
Score = 25.4 bits (53), Expect = 5.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 153 ACEHGIQPDGQMPTDNDHPGW 215
AC G+ + P D++HPG+
Sbjct: 472 ACIEGVDYSDREPADSEHPGY 492
>At1g06870.1 68414.m00731 signal peptidase, putative similar to
chloroplast thylakoidal processing peptidase GB:CAA71502
GI:2769566 from [Arabidopsis thaliana]; contains Pfam
profile PF00461: Signal peptidase I
Length = 367
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 178 SGWMPCSQAVKLPAGITDLDSG 113
S WMPCS L I ++D G
Sbjct: 131 SKWMPCSIPATLSTDIAEVDRG 152
>At5g22780.1 68418.m02663 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1013
Score = 25.0 bits (52), Expect = 7.0
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +3
Query: 36 NLILHLSIEKKLKSKCVS 89
+L++HL EK++ S+CV+
Sbjct: 305 SLVMHLDAEKEMMSQCVA 322
>At5g22770.3 68418.m02661 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 25.0 bits (52), Expect = 7.0
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +3
Query: 36 NLILHLSIEKKLKSKCVS 89
+L++HL EK++ S+CV+
Sbjct: 305 SLVMHLDAEKEMMSQCVA 322
>At5g22770.2 68418.m02660 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 25.0 bits (52), Expect = 7.0
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +3
Query: 36 NLILHLSIEKKLKSKCVS 89
+L++HL EK++ S+CV+
Sbjct: 305 SLVMHLDAEKEMMSQCVA 322
>At5g22770.1 68418.m02659 adaptin family protein similar to
SP|P18484 adaptor-related protein complex 2 alpha 2
subunit (Alpha-adaptin C) (Clathrin assembly protein
complex 2 alpha-C large chain) {Rattus norvegicus};
contains Pfam profiles PF01602 Adaptin N terminal
region, PF02883 Adaptin C-terminal domain
Length = 1012
Score = 25.0 bits (52), Expect = 7.0
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +3
Query: 36 NLILHLSIEKKLKSKCVS 89
+L++HL EK++ S+CV+
Sbjct: 305 SLVMHLDAEKEMMSQCVA 322
>At5g07140.1 68418.m00814 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 583
Score = 24.6 bits (51), Expect = 9.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 39 LILHLSIEKKLKSKCVSASMYTLAKPESRSVMPAGSFTACE 161
L++ EK K K V+A + KP+S SV CE
Sbjct: 217 LLVESGQEKMFKVKVVNALRSAVRKPKSTSVKLPFGLCGCE 257
>At4g27630.2 68417.m03972 expressed protein
Length = 467
Score = 24.6 bits (51), Expect = 9.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 230 KGYSSPPRMVIVCGHLAIRLDAVLTGSKAPSRHY 129
KG+ S P++V G + + L AVL+G A + Y
Sbjct: 140 KGFFSMPQLVSRIGVIGVTLMAVLSGFGAVNLPY 173
>At3g26860.1 68416.m03361 self-incompatibility protein-related
similar to S3 self-incompatibility protein [Papaver
rhoeas] GI:1107841
Length = 122
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 89 CIYVHVGQAGVQIGN 133
CI HV AG++IGN
Sbjct: 13 CILGHVSSAGIRIGN 27
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = +3
Query: 135 PAGSFTACEHGIQPDGQMPTDNDHPGWR 218
P +F G+ P G MP PG R
Sbjct: 87 PVANFQNPSSGVPPPGSMPQYQPQPGMR 114
>At1g01610.1 68414.m00078 phospholipid/glycerol acyltransferase
family protein similar to unknown protein GI:3335359
from [Arabidopsis thaliana]
Length = 503
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 160 STASSLMARCPQTMTIRGGDEYPF 231
S ++ + R P+ MT+ GG + PF
Sbjct: 433 SYEATFLDRLPEEMTVNGGGKTPF 456
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,683,505
Number of Sequences: 28952
Number of extensions: 103381
Number of successful extensions: 340
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,070,560
effective HSP length: 59
effective length of database: 10,362,392
effective search space used: 217610232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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