Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0493
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.5  
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    27   2.0  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    27   2.6  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   7.9  

>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = +2

Query: 404 SKDYIVN-----KLFSYLISFVCCRSIHIYTSCTLLSFCPK-RFQRSLL 532
           SKDY ++     K   Y++  +C   +  YT+ +L+  C +   Q+SLL
Sbjct: 79  SKDYFIDLSKRYKCLEYIVERLCSTKVSTYTTPSLIEVCNRISNQKSLL 127


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 415 HCEQTV*LLNFVCLLPINSYLYLM 486
           HC   +  +   C+LP N Y+YL+
Sbjct: 246 HCNSWIQRIYITCVLPRNHYIYLL 269


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 368 LRI*LSTLVCTLSKDYIVNKLFSYLISFVCCRSIHIYTSCTLLS 499
           +R+ L+     L KD + N  FS + S +    IH + SC L+S
Sbjct: 223 MRLLLNECEPLLKKDILSNLPFSIVQSILLNLDIHSFLSCRLVS 266


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 283 QRVFAVTNHVDGRTPQNNTYTTKYIN*VPTNLTINISLYL 402
           Q +    N  +G  PQ N Y T+Y N  P +L  N  L L
Sbjct: 491 QAISYYANSPEGDLPQPNIYLTRYTN-PPKSLLDNCILDL 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,943
Number of Sequences: 5004
Number of extensions: 45442
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)