Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0493
(573 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49130-4|CAA88969.1| 280|Caenorhabditis elegans Hypothetical pr... 50 9e-07
Z81584-9|CAB04680.2| 334|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z81584-2|CAE53738.1| 298|Caenorhabditis elegans Hypothetical pr... 27 7.2
U97191-2|AAB52431.1| 214|Caenorhabditis elegans Uncoordinated p... 27 7.2
U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate rece... 27 7.2
U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate rece... 27 7.2
AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA iono... 27 7.2
U80022-4|AAC25887.2| 469|Caenorhabditis elegans Expulsion defec... 27 9.5
U80022-3|AAV28354.1| 490|Caenorhabditis elegans Expulsion defec... 27 9.5
U80022-2|AAV28355.1| 510|Caenorhabditis elegans Expulsion defec... 27 9.5
U80022-1|AAV28356.1| 501|Caenorhabditis elegans Expulsion defec... 27 9.5
AC024882-11|AAX22280.1| 333|Caenorhabditis elegans Seven tm rec... 27 9.5
AC024882-10|AAF60929.1| 341|Caenorhabditis elegans Seven tm rec... 27 9.5
>Z49130-4|CAA88969.1| 280|Caenorhabditis elegans Hypothetical
protein T06D8.6 protein.
Length = 280
Score = 50.4 bits (115), Expect = 9e-07
Identities = 18/33 (54%), Positives = 26/33 (78%)
Frame = -2
Query: 557 FAMLDVRPAINSVENVWDRMKVMYMRYRYELIG 459
F +LDVRPA+N + N+WDRM V Y R+++E +G
Sbjct: 231 FTILDVRPAVNDIGNIWDRMVVAYWRFKFETLG 263
>Z81584-9|CAB04680.2| 334|Caenorhabditis elegans Hypothetical
protein T04C12.2a protein.
Length = 334
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 401 LSKDYIVNKLFSYLISFVCCRSIHIYTSCTLL-SFCPKRFQRSLLL 535
+S IV LFS L F C ++Y S ++ S ++FQRS L
Sbjct: 214 MSTGVIVLMLFSQLGFFTICCIYYLYISTAIMISSNTRKFQRSFFL 259
>Z81584-2|CAE53738.1| 298|Caenorhabditis elegans Hypothetical
protein T04C12.2b protein.
Length = 298
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 401 LSKDYIVNKLFSYLISFVCCRSIHIYTSCTLL-SFCPKRFQRSLLL 535
+S IV LFS L F C ++Y S ++ S ++FQRS L
Sbjct: 178 MSTGVIVLMLFSQLGFFTICCIYYLYISTAIMISSNTRKFQRSFFL 223
>U97191-2|AAB52431.1| 214|Caenorhabditis elegans Uncoordinated
protein 108 protein.
Length = 214
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 431 FSYLISFVCCRSIHIYTSCTLLSFCPKRFQ 520
++YL ++ + SC LL F KRFQ
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQ 32
>U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform b protein.
Length = 977
Score = 27.5 bits (58), Expect = 7.2
Identities = 6/25 (24%), Positives = 18/25 (72%)
Frame = -2
Query: 569 TKYQFAMLDVRPAINSVENVWDRMK 495
T + +++++P +NS+ ++W+R +
Sbjct: 426 TNFSAEIVEIKPGVNSLNSIWERFQ 450
>U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform a protein.
Length = 908
Score = 27.5 bits (58), Expect = 7.2
Identities = 6/25 (24%), Positives = 18/25 (72%)
Frame = -2
Query: 569 TKYQFAMLDVRPAINSVENVWDRMK 495
T + +++++P +NS+ ++W+R +
Sbjct: 357 TNFSAEIVEIKPGVNSLNSIWERFQ 381
>AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA
ionotropic glutamate receptorsubunit GLR-2 protein.
Length = 977
Score = 27.5 bits (58), Expect = 7.2
Identities = 6/25 (24%), Positives = 18/25 (72%)
Frame = -2
Query: 569 TKYQFAMLDVRPAINSVENVWDRMK 495
T + +++++P +NS+ ++W+R +
Sbjct: 426 TNFSAEIVEIKPGVNSLNSIWERFQ 450
>U80022-4|AAC25887.2| 469|Caenorhabditis elegans Expulsion
defective (defecation)protein 2, isoform a protein.
Length = 469
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 447 RLFVADQFISIPHVHYFHSVPNVFNGVY 530
RL VAD +IS +YF P F V+
Sbjct: 74 RLKVADAYISADDAYYFQRSPTSFEAVF 101
>U80022-3|AAV28354.1| 490|Caenorhabditis elegans Expulsion
defective (defecation)protein 2, isoform b protein.
Length = 490
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 447 RLFVADQFISIPHVHYFHSVPNVFNGVY 530
RL VAD +IS +YF P F V+
Sbjct: 95 RLKVADAYISADDAYYFQRSPTSFEAVF 122
>U80022-2|AAV28355.1| 510|Caenorhabditis elegans Expulsion
defective (defecation)protein 2, isoform c protein.
Length = 510
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 447 RLFVADQFISIPHVHYFHSVPNVFNGVY 530
RL VAD +IS +YF P F V+
Sbjct: 115 RLKVADAYISADDAYYFQRSPTSFEAVF 142
>U80022-1|AAV28356.1| 501|Caenorhabditis elegans Expulsion
defective (defecation)protein 2, isoform d protein.
Length = 501
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 447 RLFVADQFISIPHVHYFHSVPNVFNGVY 530
RL VAD +IS +YF P F V+
Sbjct: 106 RLKVADAYISADDAYYFQRSPTSFEAVF 133
>AC024882-11|AAX22280.1| 333|Caenorhabditis elegans Seven tm
receptor protein 169,isoform b protein.
Length = 333
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 369 RYLVNIFCCVSIILWSSSVDMVCH-CKNSL*SCFFEGLHFSNW 244
+YL+ FCC SI+ S +D++ S SCFF ++ +W
Sbjct: 41 KYLLIYFCCFSILY--SILDIIVEPFIQSHGSCFFMMMNLGSW 81
>AC024882-10|AAF60929.1| 341|Caenorhabditis elegans Seven tm
receptor protein 169,isoform a protein.
Length = 341
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 369 RYLVNIFCCVSIILWSSSVDMVCH-CKNSL*SCFFEGLHFSNW 244
+YL+ FCC SI+ S +D++ S SCFF ++ +W
Sbjct: 41 KYLLIYFCCFSILY--SILDIIVEPFIQSHGSCFFMMMNLGSW 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,407,560
Number of Sequences: 27780
Number of extensions: 247013
Number of successful extensions: 509
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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