Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0493
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17170.1 68417.m02583 Rab2-like GTP-binding protein (RAB2) id...    27   6.7  
At1g27200.1 68414.m03313 expressed protein contains Pfam PF01697...    27   6.7  
At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,...    27   6.7  
At4g35860.1 68417.m05093 Ras-related GTP-binding protein, putati...    27   8.9  

>At4g17170.1 68417.m02583 Rab2-like GTP-binding protein (RAB2)
           identical to Rab2-like protein (At-RAB2) GI:1765896 from
           [Arabidopsis thaliana]
          Length = 211

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 431 FSYLISFVCCRSIHIYTSCTLLSFCPKRFQ 520
           ++YL  ++      +  SC LL F  KRFQ
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQ 32


>At1g27200.1 68414.m03313 expressed protein contains Pfam PF01697:
           Domain of unknown function
          Length = 575

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 405 DKVQTNVDS*IRRYLVNIFCCVSIILWSSSVDMV 304
           +K Q  V    +RYL+  FCC  ++L+  S D +
Sbjct: 14  NKQQVKVQFLSQRYLILCFCCFFVLLFFLSSDRI 47


>At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,
           putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
           transcription complex, subunit 8 (CAF1-like protein,
           CALIFp) [Homo sapiens]
          Length = 360

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 328 VEFFRRHGLSLQKL 287
           +EF RRHGL LQK+
Sbjct: 106 IEFLRRHGLDLQKI 119


>At4g35860.1 68417.m05093 Ras-related GTP-binding protein, putative
           similar to Rab2-like GTP-binding protein GI:1765896 from
           [Arabidopsis thaliana]
          Length = 211

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 431 FSYLISFVCCRSIHIYTSCTLLSFCPKRFQ 520
           + YL  ++      +  SC LL F  KRFQ
Sbjct: 3   YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQ 32


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,107,889
Number of Sequences: 28952
Number of extensions: 207182
Number of successful extensions: 368
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)