Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0492
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    91   8e-20
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    60   1e-10
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    58   5e-10
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   3.5  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    24   8.1  

>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 90.6 bits (215), Expect = 8e-20
 Identities = 52/102 (50%), Positives = 69/102 (67%)
 Frame = -2

Query: 348 YKSKKLRVKYKHTVQDGA*S*PRGYTQTH*GDRKMLIQSAIVRIM*TRKTLKHQHLVVEV 169
           ++ KK+RV+    ++           +T   DRK+L+QSAIVRIM  R+TLKH  LV E 
Sbjct: 668 FRMKKIRVQLNLPIRSEQKQESLETHKTIEEDRKLLLQSAIVRIMKARRTLKHVVLVKET 727

Query: 168 LNQLSSRFKPRVPVIKKCIDMLIEKEYLERTEGEKDTYRYLA 43
           ++Q+ SRF P+V  IK+CIDMLIEKEYLER +G +D Y YLA
Sbjct: 728 IDQIKSRFTPKVSDIKQCIDMLIEKEYLER-QG-RDEYIYLA 767


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 31/70 (44%), Positives = 41/70 (58%)
 Frame = -2

Query: 252 RKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERTE 73
           RK    + IVR+M  RK  +H  L+ EV  QL+ RF P   +IK+ I+ LIE+EYL+R  
Sbjct: 716 RKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHPSPMMIKRRIEALIEREYLQRQA 775

Query: 72  GEKDTYRYLA 43
                Y YLA
Sbjct: 776 DNGRIYEYLA 785


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 58.0 bits (134), Expect = 5e-10
 Identities = 28/67 (41%), Positives = 43/67 (64%)
 Frame = -2

Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
           DR+  +Q++IVR+M  ++ +KH  LV  V+N +  R  P V  +K  I+ L+EKEYLER 
Sbjct: 666 DRQFELQASIVRVMKQKEKMKHDDLVQYVINNVKDRGIPLVSDVKTAIEKLLEKEYLERE 725

Query: 75  EGEKDTY 55
           + +  TY
Sbjct: 726 DNDIYTY 732


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 238 SVRHSPDNVNAQDP*ASAPSGG 173
           S RH+P+N N Q P A+ P  G
Sbjct: 146 SSRHAPNNSNIQPPSAAPPVPG 167


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 268 LCV---ASWSTLSSVLNGVFIFHAELFALV 348
           LCV   ASW      ++G++I + ++ AL+
Sbjct: 389 LCVKKAASWKYYKYTIDGIYIIYFDMLALI 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,573
Number of Sequences: 5004
Number of extensions: 28487
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)