Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0492
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0737 - 31328473-31330513,31331015-31331184 77 4e-15
04_04_1339 + 32760424-32760584,32762428-32764462 77 7e-15
08_01_0471 - 4147170-4149207,4150535-4150692 75 2e-14
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297... 75 2e-14
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 72 2e-13
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 72 2e-13
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608... 66 1e-11
03_01_0396 + 3079840-3079946,3080503-3080737,3080826-3080933,308... 29 1.1
10_08_0826 - 20840445-20840504,20840692-20840778,20841344-20841706 27 4.5
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272... 27 4.5
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381... 27 7.8
>02_05_0737 - 31328473-31330513,31331015-31331184
Length = 736
Score = 77.4 bits (182), Expect = 4e-15
Identities = 38/71 (53%), Positives = 50/71 (70%)
Frame = -2
Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
DRK I++AIVRIM +R+ L H +V EV QL +RF P VIKK I+ LIE+E+LER
Sbjct: 666 DRKPQIEAAIVRIMKSRRVLDHNSIVAEVTKQLQARFMPNPVVIKKRIESLIEREFLERD 725
Query: 75 EGEKDTYRYLA 43
+ ++ YRYLA
Sbjct: 726 KADRKLYRYLA 736
>04_04_1339 + 32760424-32760584,32762428-32764462
Length = 731
Score = 76.6 bits (180), Expect = 7e-15
Identities = 38/71 (53%), Positives = 50/71 (70%)
Frame = -2
Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
DRK I++AIVRIM +R+ L H ++ EV QL SRF P VIKK I+ LIE+E+LER
Sbjct: 661 DRKPQIEAAIVRIMKSRRVLDHNSIITEVTKQLQSRFLPNPVVIKKRIESLIEREFLERD 720
Query: 75 EGEKDTYRYLA 43
+ ++ YRYLA
Sbjct: 721 KVDRKMYRYLA 731
>08_01_0471 - 4147170-4149207,4150535-4150692
Length = 731
Score = 75.4 bits (177), Expect = 2e-14
Identities = 37/71 (52%), Positives = 49/71 (69%)
Frame = -2
Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
DRK I++AIVRIM +R+ L H +V EV QL RF P VIKK ++ LIE+E+LER
Sbjct: 661 DRKPQIEAAIVRIMKSRRVLDHNSIVTEVTKQLQPRFMPNPVVIKKRVESLIEREFLERD 720
Query: 75 EGEKDTYRYLA 43
+ ++ YRYLA
Sbjct: 721 KTDRKLYRYLA 731
>01_04_0018 +
15128174-15128316,15128445-15128544,15129573-15129758,
15129877-15129924,15130006-15130209,15130476-15130565,
15130667-15130747,15130827-15130889,15131794-15131832,
15131914-15132000,15132103-15132252,15132331-15132386,
15132493-15132775,15132989-15133132,15133233-15133451,
15133528-15133695,15133868-15133969
Length = 720
Score = 75.4 bits (177), Expect = 2e-14
Identities = 36/71 (50%), Positives = 48/71 (67%)
Frame = -2
Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
DR+ I +++VRIM +RK L HQ LV E + QLS FKP + +IK+ I+ LI +EYLER
Sbjct: 650 DRRFAIDASLVRIMKSRKVLGHQQLVAECVEQLSRMFKPDIKIIKRRIEDLISREYLERD 709
Query: 75 EGEKDTYRYLA 43
TY+YLA
Sbjct: 710 SENAQTYKYLA 720
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 72.1 bits (169), Expect = 2e-13
Identities = 36/71 (50%), Positives = 47/71 (66%)
Frame = -2
Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
DR+ I ++IVRIM +RK + HQ LV E + QLS FKP IKK I+ LI ++YLER
Sbjct: 674 DRRYAIDASIVRIMKSRKVMGHQQLVAECVEQLSRMFKPDFKAIKKRIEDLITRDYLERE 733
Query: 75 EGEKDTYRYLA 43
+ + YRYLA
Sbjct: 734 KDNANVYRYLA 744
>01_04_0017 -
15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 71.7 bits (168), Expect = 2e-13
Identities = 36/71 (50%), Positives = 47/71 (66%)
Frame = -2
Query: 255 DRKMLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERT 76
DR+ I ++IVRIM +RK L HQ LV+E + QL FKP IKK I+ LI ++YLER
Sbjct: 680 DRRYAIDASIVRIMKSRKVLGHQQLVMECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 739
Query: 75 EGEKDTYRYLA 43
+ + YRYLA
Sbjct: 740 KDNPNVYRYLA 750
>03_06_0221 + 32458867-32459149,32460271-32460386,32460461-32460807,
32461231-32461411,32461507-32461629,32461828-32462115,
32462536-32462688,32463068-32463169,32463260-32463313,
32463518-32463624,32463867-32463927,32464019-32464150,
32464245-32464382,32464459-32464539,32464635-32464715,
32465133-32465213,32465300-32465413
Length = 813
Score = 65.7 bits (153), Expect = 1e-11
Identities = 41/102 (40%), Positives = 56/102 (54%)
Frame = -2
Query: 348 YKSKKLRVKYKHTVQDGA*S*PRGYTQTH*GDRKMLIQSAIVRIM*TRKTLKHQHLVVEV 169
Y+ K ++ K TV++ + R + DR+ + +AIVRIM TRKTL H L+ E+
Sbjct: 719 YRIKVNAIQMKETVEENTSTTERVFQ-----DRQYQVDAAIVRIMKTRKTLSHTLLITEL 773
Query: 168 LNQLSSRFKPRVPVIKKCIDMLIEKEYLERTEGEKDTYRYLA 43
QL KP IKK I+ LI++EYLER Y YLA
Sbjct: 774 FQQLKFPIKP--SDIKKRIESLIDREYLERDRSNPQIYNYLA 813
>03_01_0396 +
3079840-3079946,3080503-3080737,3080826-3080933,
3081009-3081178,3081607-3081740,3081856-3082027,
3082160-3082712,3082836-3082948,3083051-3083294,
3083434-3083652
Length = 684
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/50 (38%), Positives = 22/50 (44%)
Frame = +1
Query: 208 RLHYPDYGGLNKHLSVSSMCLCVASWSTLSSVLNGVFIFHAELFALVSRV 357
RLHYP Y K + SS L S T + + FI H E A RV
Sbjct: 192 RLHYPAYDKFLKEMDKSSEFLQKVSTPTGTELAEDEFILHIEGTAGTQRV 241
>10_08_0826 - 20840445-20840504,20840692-20840778,20841344-20841706
Length = 169
Score = 27.5 bits (58), Expect = 4.5
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -1
Query: 163 PVVVTVQAQSSCHQEMHRYAD*EGIFRAYRGREGHLQIPGVIAPLAGRK 17
P+ + Q HQE + Y G R G E +L+ PG P A RK
Sbjct: 20 PLRLLQQQHGEDHQEEYGYGSSGGCCRTPTGGESNLKAPGTCPP-APRK 67
>02_05_0259 -
27226378-27226398,27226643-27226813,27227063-27227284,
27227508-27227668,27227933-27227996,27228002-27228194,
27228499-27228587,27228668-27228852,27229671-27229779,
27229880-27229936,27230023-27230175
Length = 474
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 131 GTLGLNRDDNWLRTST 178
G G +RDDNW+ TST
Sbjct: 365 GKFGQSRDDNWVSTST 380
>11_04_0340 - 16536571-16536705,16536820-16536951,16537265-16538106,
16538480-16538940,16539032-16540314,16540423-16541627,
16541857-16542157
Length = 1452
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 202 LARLHYPDYGGLNKHLSVSSMCLCVASWST 291
L RLH D +NK L + +C +AS+ST
Sbjct: 1360 LTRLHSADCIQINKILHIVVVCAALASFST 1389
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,407,150
Number of Sequences: 37544
Number of extensions: 194310
Number of successful extensions: 499
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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