Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0492
         (415 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28840| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   1e-14
SB_22414| Best HMM Match : Taeniidae_ag (HMM E-Value=5.1)              46   1e-05
SB_40654| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   4e-04
SB_19637| Best HMM Match : Cullin (HMM E-Value=0)                      38   0.002
SB_31635| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_6903| Best HMM Match : Cullin (HMM E-Value=0)                       29   1.1  
SB_48429| Best HMM Match : PI3_PI4_kinase (HMM E-Value=7.7e-09)        28   2.6  
SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)         27   4.6  
SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)              27   4.6  
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)                    27   8.1  

>SB_28840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 75.8 bits (178), Expect = 1e-14
 Identities = 43/79 (54%), Positives = 53/79 (67%)
 Frame = -2

Query: 357 YSGYKSKKLRVKYKHTVQDGA*S*PRGYTQTH*GDRKMLIQSAIVRIM*TRKTLKHQHLV 178
           + GYK+KKLRV     ++    +      +    DRK+LIQ+AIVRIM  RK LKHQ L+
Sbjct: 259 FFGYKNKKLRVNINVPMKTEQRNEQEQTHKYIEEDRKLLIQAAIVRIMKMRKMLKHQPLL 318

Query: 177 VEVLNQLSSRFKPRVPVIK 121
            EVL+QLSSRFKPRVP IK
Sbjct: 319 AEVLSQLSSRFKPRVPTIK 337


>SB_22414| Best HMM Match : Taeniidae_ag (HMM E-Value=5.1)
          Length = 249

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 25/67 (37%), Positives = 41/67 (61%)
 Frame = -2

Query: 246 MLIQSAIVRIM*TRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERTEGE 67
           M+   AIV+IM  RK + +  L  E++  L + F P+  +IK+  + LIE +YL+R E +
Sbjct: 182 MITVEAIVKIMKMRKRITNAALQTELVEILKNMFIPQKKMIKEQTEWLIEHKYLKRDEED 241

Query: 66  KDTYRYL 46
            +T+ YL
Sbjct: 242 INTFIYL 248


>SB_40654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = -2

Query: 120 KCIDMLIEKEYLERTEGEKDTYRYLA 43
           KCI+ LI+K+YL+R EG KD Y Y+A
Sbjct: 63  KCIEALIDKQYLDRQEGSKDEYSYVA 88


>SB_19637| Best HMM Match : Cullin (HMM E-Value=0)
          Length = 685

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = -2

Query: 174 EVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERTEGEK 64
           +V  QL +RF P   VIKK I+ LIE+EYL RT  ++
Sbjct: 649 KVTEQLKARFLPSPQVIKKRIEGLIEREYLARTPEDR 685


>SB_31635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 126 IKKCIDMLIEKEYLERTEGEKDTYRYLA 43
           +KK I+ LIE++Y+ER +   + Y Y+A
Sbjct: 101 LKKRIESLIERDYMERDKEIANQYHYVA 128


>SB_6903| Best HMM Match : Cullin (HMM E-Value=0)
          Length = 430

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 126 IKKCIDMLIEKEYLERTEGEKDTYRYLA 43
           +KK I+ LIE++Y+ER +   + Y Y+A
Sbjct: 403 LKKRIESLIERDYMERDKEIANQYHYVA 430


>SB_48429| Best HMM Match : PI3_PI4_kinase (HMM E-Value=7.7e-09)
          Length = 1423

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 407 VSRGRG*AWRELCCRISTRDTRAKSSA*NINTP 309
           + RG+  AW    C+I+ R++R  + + N++TP
Sbjct: 832 ILRGQTQAWVFCSCQITARESRISNPSKNVSTP 864


>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
          Length = 1693

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 111 DMLIEKEYLERTEGEKDTYRYLA*SRHSQEERLCVIK 1
           + LI K+YLER EGE++     A  R   E  + +++
Sbjct: 319 ERLIAKKYLERNEGEEEEEINRAKERARHETEIAILE 355


>SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)
          Length = 549

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = -2

Query: 177 VEVLNQLSSRFKPRVPVIKKCIDMLIEKEYLERTEGEKDTYRYLA*SRH 31
           VE+   LSS  K ++PV++K +  +I++    +T+ E+ T++    SRH
Sbjct: 208 VELRETLSSTRK-KIPVLQKSVYEIIKRYGRVQTKAEEITWKIRQTSRH 255


>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 6074

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 274 VASWSTLSSVLNGVFIFHAELFALVS 351
           V  WST S   NG+F+ HA  F   S
Sbjct: 439 VTGWSTNSDFTNGLFLEHAFCFLFES 464


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,167,308
Number of Sequences: 59808
Number of extensions: 224761
Number of successful extensions: 573
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)